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Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

Populations and Evolution · Quantitative Biology 2022-07-06 Mareike Fischer , Tom Niklas Hamann , Kristina Wicke

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Measure the similarity of the nodes in the complex networks have interested many researchers to explore it. In this paper, a new method which is based on the degree centrality and the Relative-entropy is proposed to measure the similarity…

Social and Information Networks · Computer Science 2015-02-04 Qi Zhang , Meizhu Li , Yong Deng , Sankaran Mahadevan

Due to the advent of the expressions of data other than tabular formats, the topological compositions which make samples interrelated came into prominence. Analogically, those networks can be interpreted as social connections, dataflow…

Social and Information Networks · Computer Science 2023-01-27 Hacı İsmail Aslan , Chang Choi , Hoon Ko

In weighted graphs the shortest path between two nodes is often reached through an indirect path, out of all possible connections, leading to structural redundancies which play key roles in the dynamics and evolution of complex networks. We…

Social and Information Networks · Computer Science 2023-06-14 Felipe Xavier Costa , Rion Brattig Correia , Luis M. Rocha

A standard approach to reduce the complexity of very large networks is to group together sets of nodes into clusters according to some criterion which reflects certain structural properties of the network. Beyond the well-known modularity…

Combinatorics · Mathematics 2018-02-23 Ricardo Riaza

An independent set may not contain both a vertex and one of its neighbours. This basic fact makes the uniform distribution over independent sets rather special. We consider the hard-core model, an essential generalization of the uniform…

Combinatorics · Mathematics 2025-09-04 Ewan Davies , Ross J. Kang

Discussion forums provide a channel for students to engage with peers and course material outside of class, accessible even to commuter and non-traditional populations. As such, forums can build classroom community as well as aid learning,…

Physics Education · Physics 2018-09-12 Adrienne Traxler , Andrew Gavrin , Rebecca Lindell

Routing information through networks is a universal phenomenon in both natural and manmade complex systems. When each node has full knowledge of the global network connectivity, finding short communication paths is merely a matter of…

Physics and Society · Physics 2009-05-20 Marian Boguna , Dmitri Krioukov , kc claffy

The structure of real-world social networks in large part determines the evolution of social phenomena, including opinion formation, diffusion of information and influence, and the spread of disease. Globally, network structure is…

Social and Information Networks · Computer Science 2015-01-20 Sidharth Gupta , Xiaoran Yan , Kristina Lerman

The study of networks has received increased attention recently not only from the social sciences and statistics but also from physicists, computer scientists and mathematicians. One of the principal problem in networks is community…

Machine Learning · Statistics 2014-01-27 Sharmodeep Bhattacharyya , Peter J. Bickel

Real-world networks typically exhibit several aspects, or layers, of interactions among their nodes. By permuting the role of the nodes and the layers, we establish a new criterion to construct the dual of a network. This approach allows to…

Physics and Society · Physics 2024-10-01 Charley Presigny , Marie-Constance Corsi , Fabrizio De Vico Fallani

We analytically describe the architecture of randomly damaged uncorrelated networks as a set of successively enclosed substructures -- k-cores. The k-core is the largest subgraph where vertices have at least k interconnections. We find the…

Statistical Mechanics · Physics 2009-11-11 S. N. Dorogovtsev , A. V. Goltsev , J. F. F. Mendes

The structural analysis of shape boundaries leads to the characterization of objects as well as to the understanding of shape properties. The literature on graphs and networks have contributed to the structural characterization of shapes…

Computer Vision and Pattern Recognition · Computer Science 2017-11-15 Gisele H. B. Miranda , Jeaneth Machicao , Odemir M. Bruno

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

Graphs are pervasive in our everyday lives, with relevance to biology, the internet, and infrastructure, as well as numerous other applications. It is thus necessary to have an understanding as to how quickly a graph disintegrates, whether…

Social and Information Networks · Computer Science 2025-12-25 Jeremie Fish , Mahesh Banavar , Erik Bollt

We define a new measure of network symmetry that is capable of capturing approximate global symmetries of networks. We apply this measure to different networks sampled from several classic network models, as well as several real-world…

Physics and Society · Physics 2020-12-10 Yanchen Liu

Social networks are of interest to researchers in part because they are thought to mediate the flow of information in communities and organizations. Here we study the temporal dynamics of communication using on-line data, including e-mail…

Physics and Society · Physics 2008-06-20 Gueorgi Kossinets , Jon Kleinberg , Duncan Watts

The analysis of the dynamics on complex networks is closely connected to structural features of the networks. Features like, for instance, graph-cores and node degrees have been studied ubiquitously. Here we introduce the D-spectrum of a…

Combinatorics · Mathematics 2019-12-17 Ricky X. F. Chen , Christian M. Reidys , Andrei C. Bura

Communication networks, power grids, and transportation networks are all examples of networks whose performance depends on reliable connectivity of their underlying network components even in the presence of usual network dynamics due to…

Physics and Society · Physics 2020-06-26 Arman Mohseni-Kabir , Mihir Pant , Don Towsley , Saikat Guha , Ananthram Swami
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