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Topological structure of bronchial trees affects transport of gases and aerosols in the respiratory system. We start by providing a quantitative assessment of the ability of the alternative tree representations to predict observable…

Medical Physics · Physics 2021-11-16 Ali Saab , Leila Issa , Salah Zeineddine , Daniel M. Tartakovsky , Issam Lakkis

Scientists have long sought to understand how vascular networks supply blood and oxygen to cells throughout the body. Recent work focuses on principles that constrain how vessel size changes through branching generations from the aorta to…

Tissues and Organs · Quantitative Biology 2015-09-10 Mitchell G Newberry , Daniel B Ennis , Van M Savage

In binary and ordinal regression one can distinguish between a location component and a scaling component. While the former determines the location within the range of the response categories, the scaling indicates variance heterogeneity.…

Methodology · Statistics 2019-10-31 Gerhard Tutz , Moritz Berger

The measurement of $B_s$-meson branching fractions is a fundamental tool to probe physics beyond the Standard Model. Every measurement of untagged time-integrated $B_s$-meson branching fractions is model-dependent due to the time dependence…

High Energy Physics - Phenomenology · Physics 2018-08-01 Francesco Dettori , Diego Guadagnoli

Respiration measurements of whole tree plants have been reported that give evidence that the relative per volume/mass unit respiration decreases with increase of tree body size. In this study, based on the available data published a…

Quantitative Methods · Quantitative Biology 2015-02-19 Vladimir L Gavrikov

Tree-size distribution is one of the most investigated subjects in plant population biology. The forestry literature reports that tree-size distribution trajectories vary across different stands and/or species, while the metabolic scaling…

Populations and Evolution · Quantitative Biology 2012-12-04 Tommaso Anfodillo , Marco Carrer , Filippo Simini , Ionel Popa , Jayanth R. Banavar , Amos Maritan

We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age $\tau$ as $\tau^{-\alpha}$. Depending on the exponent $\alpha$, the scaling of tree depth with tree size $n$ displays a…

Populations and Evolution · Quantitative Biology 2015-02-04 Stephanie Keller-Schmidt , Murat Tugrul , Victor M. Eguiluz , Emilio Hernandez-Garcia , Konstantin Klemm

The airflow in the bronchi applies a shear stress on the bronchial mucus, which can move the mucus. The air--mucus interaction plays an important role in cough and in chest physiotherapy (CP). The conditions under which it induces a…

Biological Physics · Physics 2021-10-18 Jonathan Stéphano , Benjamin Mauroy

This paper presents two approaches to quantifying and visualizing variation in datasets of trees. The first approach localizes subtrees in which significant population differences are found through hypothesis testing and sparse classifiers…

The origin of allometric scaling patterns that are multiples of 1/4 has long fascinated biologists. While not universal, scaling relationships with exponents that are close to multiples of 1/4 are common and have been described in all major…

Quantitative Methods · Quantitative Biology 2015-07-29 Charles A. Price , Paul Drake , Erik J. Veneklaas , Michael Renton

Many growth processes lead to intriguing stochastic patterns and complex fractal structures which exhibit local scale invariance properties. Such structures can often be described effectively by space-time trajectories of interacting…

Statistical Mechanics · Physics 2013-06-07 Adnan Ali , Robin C. Ball , Stefan Grosskinsky , Ellak Somfai

Large deviation principles and related results are given for a class of Markov chains associated to the "leaves" in random recursive trees and preferential attachment random graphs, as well as the "cherries" in Yule trees. In particular,…

Probability · Mathematics 2010-01-22 W. Bryc , D. Minda , S. Sethuraman

Many organs of higher organisms are heavily branched structures and arise by an at first sight similar process of branching morphogenesis. Yet the regulatory components and local interactions that have been identified differ greatly in…

Tissues and Organs · Quantitative Biology 2013-08-12 Dagmar Iber , Denis Menshykau

Uniform fluid flow distribution in a symmetric volume can be realized through a symmetric branched tree. It is shown here, however, that the flow partitioning can be highly sensitive to deviations from exact symmetry if inertial effects are…

Biological Physics · Physics 2009-11-10 B. Mauroy , M. Filoche , J. S. Andrade , B. Sapoval

The growth and scaling of organs is a fundamental aspect of animal development. However, how organs grow to the right size and shape required by physiological demands, remains largely unknown. Here, we provide a framework combining theory…

Biological Physics · Physics 2026-02-04 Christian Hanauer , Amrutha Palavalli , Baiqun An , Efe Ilker , Jochen C. Rink , Frank Jülicher

Scale transformations have played an extremely successful role in studies of cosmological large-scale structure by relating the non-linear spectrum of cosmological density fluctuations to the linear primordial power at longer wavelengths.…

Astrophysics · Physics 2009-11-13 Jun Pan , Peter Coles , Istvan Szapudi

Recently, neuronal avalanches have been observed to display oscillations, a phenomenon regarded as the co-existence of a scale-free behaviour (the avalanches close to criticality) and scale-dependent dynamics (the oscillations). Ordinary…

Disordered Systems and Neural Networks · Physics 2020-03-09 Johannes Pausch , Rosalba Garcia-Millan , Gunnar Pruessner

Recent experimental results on spike avalanches measured in the urethane-anesthetized rat cortex have revealed scaling relations that indicate a phase transition at a specific level of cortical firing rate variability. The scaling relations…

We first rephrase and unify known bijections between bipartite plane maps and labelled trees with the formalism of looptrees, which we argue to be both more relevant and technically simpler since the geometry of a looptree is explicitly…

Probability · Mathematics 2022-02-18 Cyril Marzouk

Predicting the growth of large cracks in brittle materials is a fundamental unresolved problem in fracture mechanics. Under out-of-plane shear loading, an initially planar crack may fragment into multiple cracks, forming an echelon crack…

Materials Science · Physics 2026-01-07 Olivia Ward , Aditya Kumar
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