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Related papers: The Reversible Phase Transition of DNA-Linked Coll…

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We investigate melting transition of DNA sequences embedded in a Langevin fluctuation-dissipation thermal bath. Torsional effects are considered by a twist angle $\varphi$ between neighboring base pairs stacked along the molecule backbone.…

Biomolecules · Quantitative Biology 2021-08-05 O. Farzadian , T. Oikonomou , M. Moradkhani

Multicomponent gel systems have garnered much interest due to their compelling mechanical properties in the past decade. Yet, some mechanisms associated with multicomponent gels, such as sequential gelation, have been explored primarily in…

Soft Condensed Matter · Physics 2026-03-31 Alexander Kaltashov , Safa Jamali

Performing light scattering experiments we show that introducing short-ranged attraction to a colloidal suspension of nearly hard spheres by addition of free polymer produces new glass transition phenomena. We observe a dramatic…

Soft Condensed Matter · Physics 2009-11-07 Thomas Eckert , Eckhard Bartsch

The proper design of DNA sequences allows for the formation of well defined supramolecular units with controlled interactions via a consecution of self-assembling processes. Here, we benefit from the controlled DNA self-assembly to…

Soft Condensed Matter · Physics 2018-02-14 Javier Fernandez-Castanon , Francesca Bomboi , Francesco Sciortino

We present the first direct experimental evidence showing that yielding of a prototypical soft solid - a colloidal glass - is a non-equilibrium 'absorbing' phase transition. By simultaneously quantifying single-particle dynamics and bulk…

Soft Condensed Matter · Physics 2014-02-13 K. Hima Nagamanasa , Shreyas Gokhale , A. K. Sood , Rajesh Ganapathy

This paper reports the experimental, analytical, and numerical study of resistive-nanoindentation tests performed on gold samples (bulk and thin film). First, the relevant contributions to electrical contact resistance are discussed and…

We examine the crystallization dynamics of nanoparticles reversibly tethered by DNA hybridization. We show that the crystallization happens readily only in a narrow temperature "slot," and always proceeds via a two-step process, mediated by…

Soft Condensed Matter · Physics 2010-08-13 Wei Dai , Sanat K. Kumar , Francis W. Starr

We report a study of reversible adsorption of DNA-coated colloids on complementary functionalized oil droplets. We show that it is possible to control the surface coverage of oil droplets by colloidal particles, by exploiting the fact that…

Materials adopting the diamond structure possess useful properties in atomic and colloidal systems, and are a popular target for synthesis in colloids where a photonic band gap is possible. The desirable photonic properties of the diamond…

Fractionation is necessary for self-assembly in multicomponent mixtures. Here, reversible fractionation and crystallization are realized and studied in a two-dimensional binary colloids which is supersaturated by enhancing the attraction…

Soft Condensed Matter · Physics 2020-08-20 Lian Dan Yao , Hong Yu Chen , Yan Shi , Ying Liang , Tian Hui Zhang

Eutectic related reaction is a special chemical/physical reaction involving multiple phases, solid and liquid. Visualization of phase reaction of composite nanomaterials with high spatial and temporal resolution provides a key understanding…

Materials Science · Physics 2022-06-01 Bin Chen , Xuewen Fu , Jau Tang , Mykhaylo Lysevych , Hark Hoe Tan , Chennupati Jagadish , Ahmed H. Zewail

Low-temperature scanning tunneling microscopy is used here to study dynamic bonding of gold atoms on surfaces under low coordination conditions. In the experiments, using an atomically-sharp gold tip, a gold adatom is deposited onto a gold…

Materials Science · Physics 2022-10-05 W. Dednam , S. Tewari , E. B. Lombardi , J. J. Palacios , J. M. van Ruitenbeek , C. Sabater

Just like atoms combine into molecules, colloids can self-organize into predetermined structures according to a set of design principles. Controlling valence -- the number of inter-particle bonds -- is a prerequisite for the assembly of…

Soft Condensed Matter · Physics 2022-01-05 Angus McMullen , Sascha Hilgenfeldt , Jasna Brujic

We investigate the melting transition of non-supercoiled circular DNA of different lengths, employing Brownian dynamics simulation. In the absence of supercoiling, we find that melting of circular DNA is driven by a large bubble, which…

Soft Condensed Matter · Physics 2024-10-14 Souradeep Sengupta , Somendra M. Bhattacharjee , Garima Mishra

We use a statistical mechanical model to study nonthermal denaturation of DNA in the presence of protein-mediated loops. We find that looping proteins which randomly link DNA bases located at a distance along the chain could cause a…

Soft Condensed Matter · Physics 2009-12-22 K. G. Petrosyan , Chin-Kun Hu

When DNA molecules are heated they denature. This occurs locally so that loops of molten single DNA strands form, connected by intact double-stranded DNA pieces. The properties of this "melting" transition have been intensively…

Biological Physics · Physics 2015-06-29 E. Werner , M. Reiter-Schad , T. Ambjörnsson , B. Mehlig

Despite the fundamental importance of solid--solid transitions for metallurgy, ceramics, earth science, reconfigurable materials, and colloidal matter, the details of how materials transform between two solid structures are poorly…

Soft Condensed Matter · Physics 2017-09-08 Chrisy Xiyu Du , Greg van Anders , Richmond S. Newman , Sharon C. Glotzer

Attractive colloidal gels display a solid-to-fluid transition as shear stresses above the yield stress are applied. This shear-induced transition is involved in virtually any application of colloidal gels. It is also crucial for controlling…

Soft Condensed Matter · Physics 2009-11-09 Thomas Gibaud , Frelat Damien , Sébastien Manneville

Colloidal particles with DNA `legs' that can bind reversibly to receptors on a surface can be made to `walk' if there is a gradient in receptor concentration. We use a combination of theory and Monte Carlo simulations to explore how…

We numerically examine dynamical irreversible to reversible transitions and random organization for periodically driven gliding dislocation assemblies using the stroboscopic protocol developed to identify random organization in periodically…

Materials Science · Physics 2017-12-06 C. Zhou , C. J. Olson Reichhardt , C. Reichhardt , I. Beyerlein