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Cell walls define a cell shape in bacteria. They are rigid to resist large internal pressures, but remarkably plastic to adapt to a wide range of external forces and geometric constraints. Currently, it is unknown how bacteria maintain…

Soft Condensed Matter · Physics 2014-05-01 Ariel Amir , Farinaz Babaeipour , Dustin B. McIntosh , David R. Nelson , Suckjoon Jun

A stochastic model is used to assess the effect of external parameters on the development of submerged biofilms on smooth and rough surfaces. The model includes basic cellular mechanisms, such as division and spreading, together with an…

Soft Condensed Matter · Physics 2024-01-17 David Rodriguez , Baldvin Einarsson , Ana Carpio

The buckling and twisting of slender, elastic fibers is a deep and well-studied field. A slender elastic rod that is twisted with respect to a fixed end will spontaneously form a loop, or hockle, to relieve the torsional stress that builds.…

Soft Condensed Matter · Physics 2021-08-03 Adam Fortais , Elsie Loukiantchenko , Kari Dalnoki-Veress

A strained epitaxial film deposited on a deformable substrate undergoes a morphological instability relaxing the elastic energy by surface diffusion. The nonlinear and nonlocal dynamical equations of such films with wetting interactions are…

Statistical Mechanics · Physics 2011-11-16 Jean-Noel Aqua , Thomas Frisch , Alberto Verga

Structural elements made of laminated hardwood are increasingly used in timber engineering. In this combined numerical and experimental approach, damage onset and propagation in uni-directional and cross-laminated samples out of European…

Materials Science · Physics 2015-03-16 Mohammad Masoud Hassani , Falk K. Wittel , Samuel Ammann , Peter Niemz , Hans J. Herrmann

Membrane pores are implicated in several critical functions, including cell fusion and the transport of signaling molecules for intercellular communication. However, these structural features are often difficult to probe directly. Droplet…

Soft Condensed Matter · Physics 2025-11-13 Nivedina A. Sarma , David A. King , Xuefei Wu , Brett A. Helms , Paul D. Ashby , Thomas P. Russell , Ahmad K. Omar

Curvature in biological membranes can be generated by a variety of different molecular mechanisms such as protein scaffolding, lipid or protein asymmetry, cytoskeletal forces, etc. These mechanisms have the net effect of generating stresses…

The measurement of cellular traction forces on soft elastic substrates has become a standard tool for many labs working on mechanobiology. Here we review the basic principles and different variants of this approach. In general, the…

Quantitative Methods · Quantitative Biology 2015-06-09 Ulrich S. Schwarz , Jerome R. D. Soine

Many processes in eukaryotic cells, including cell motility, rely on the growth of branched actin networks from surfaces. Despite its central role the mechano-chemical coupling mechanisms which guide the growth process are poorly…

Soft Condensed Matter · Physics 2015-06-23 Karin John , Denis Caillerie , Chaouqi Misbah

Dynamic trees are mixtures of tree structured belief networks. They solve some of the problems of fixed tree networks at the cost of making exact inference intractable. For this reason approximate methods such as sampling or mean field…

Machine Learning · Computer Science 2013-01-18 Amos J. Storkey

The eye grows during childhood to position the retina at the correct distance behind the lens to enable focused vision, a process called emmetropization. Animal studies have demonstrated that this growth process is dependent upon visual…

Biological Physics · Physics 2021-01-22 L. S. Kimpton , B. J. Walker , C. L. Hall , B. Bintu , D. Crosby , H. M. Byrne , A. Goriely

By revisiting a model proposed in [45], we address the accretive growth of a viscoelastic solid at large strains. The accreted material is assumed to accumulate at the boundary of the body in an unstressed state. The growth process is…

Analysis of PDEs · Mathematics 2025-08-28 Andrea Chiesa , Ulisse Stefanelli

The hygro-mechanical behavior of a hierarchical cellular material, i.e. growth rings of softwood is investigated using a two-scale micro-mechanics model based on a computational homogenization technique. The lower scale considers the…

Materials Science · Physics 2015-09-22 Ahmad Rafsanjani , Dominique Derome , Falk K. Wittel , Jan Carmeliet

We develop a magnetic ribbon model for molecular cloud filaments. These result from turbulent compression in a molecular cloud in which the background magnetic field sets a preferred direction. We use our model to calculate a synthetic…

Astrophysics of Galaxies · Physics 2017-03-17 Sayantan Auddy , Shantanu Basu , Takahiro Kudoh

What are the general principles that allow proper growth of a tissue or an organ? A growing leaf is an example of such a system: it increases its area by orders of magnitude, maintaining a proper (usually flat) shape. How can this be…

Tissues and Organs · Quantitative Biology 2020-05-13 S. Armon , M. Moshe , E. Sharon

Cells exhibit qualitatively different behaviors on substrates with different rigidities. The fact that cells are more polarized on the stiffer substrate motivates us to construct a two-dimensional cell with the distribution of focal…

Biological Physics · Physics 2017-07-26 Guangyuan Yu , Jingchen Feng , Haoran Man , Herbert Levine

In biological systems, the growth of cells, tissues, and organs is influenced by mechanical cues. Locally, cell growth leads to a mechanically heterogeneous environment as cells pull and push their neighbors in a cell network. Despite this…

Biological Physics · Physics 2021-03-17 Alexander Erlich , Gareth W. Jones , Françoise Tisseur , Derek E. Moulton , Alain Goriely

Our understanding of the elasticity and rheology of disordered materials, such as granular piles, foams, emulsions or dense suspensions relies on improving experimental tools to characterize their behaviour at the particle scale. While 2D…

Soft Condensed Matter · Physics 2010-09-24 Mohammad Saadatfar , Adrian P. Sheppard , Tim J. Senden , Alexandre J. Kabla

A model of the regular arrangement of leaves on a plant stem (phyllotactic patterns) is proposed, based on a new plant pattern algorithm. Tripartite patterning is proposed to occur by the interaction of two signaling pathways. Each pathway…

Tissues and Organs · Quantitative Biology 2009-07-29 F. W. Cummings

We study the pinning of a two-dimensional membrane to a patterned substrate within elastic theory both in the bending rigidity and in the strain dominated regimes. We find that both the in-plane strains and the bending rigidity can lead to…

Materials Science · Physics 2011-04-19 S. Viola Kusminskiy , D. K. Campbell , A. H. Castro Neto , F. Guinea