Related papers: Analysis of PIN1 WW domain through a simple Statis…
We present a numerical Monte Carlo analysis of a continuos spin Ising chain that can describe the statistical proterties of folded proteins. We find that depending on the value of the Metropolis temperature, the model displays the three…
The ground state of spin-$1\over 2$ fermions with contact $s$-wave inter- and $p$-wave intra-species interactions is discussed. Particularly, we formulate the mean field scheme for calculating thermodynamic properties of the system in…
An efficient Monte Carlo method is extended to evaluate directly domain-wall free-energy for randomly frustrated spin systems. Using the method, critical phenomena of spin-glass phase transition is investigated in 4d +/-J Ising model under…
The two-dimensional spin-1 Baxter-Wu model is studied by using Monte Carlo simulations. The standard single-spin-flip Metropolis algorithm is used to generate the configurations from which the order parameter, specific heat and magnetic…
We modify and extend the recently developed statistical mechanical model for predicting the thermodynamic properties of chain molecules having noncovalent double-stranded conformations, as in RNA or ssDNA, and $\beta-$sheets in protein, by…
We perform Monte Carlo simulations to study the elastic properties of the helix-coil worm-like chain model of alpha-helical polypeptides. In this model the secondary structure enters as a scalar (Ising like) variable that controls the local…
We use quantum Monte Carlo methods in the framework of the interacting nuclear shell model to calculate the statistical properties of nuclei at finite temperature and/or excitation energies. With this approach we can carry out realistic…
A resampling scheme provides a way to switch low-weight particles for sequential Monte Carlo with higher-weight particles representing the objective distribution. The less the variance of the weight distribution is, the more concentrated…
We propose a microscopic model that describes the magnetic behavior of the mixed-spin quantum systems R$_2$BaNiO$_5$ (R= magnetic rare earth). An evaluation of the properties of this model by Quantum Monte Carlo simulations shows remarkable…
Conventional magnetic domain walls are characterized by reorientation of local spins. However, what occurs at the boundary of itinerant magnets is largely unknown. Here using spin-sensitive scanning tunneling microscopy, we investigated the…
Magnetic phenomena of the superantiferromagnetic Ising model in both uniform longitudinal ($H$) and transverse ($\Omega $) magnetic fields are studied by employing a mean-field variational approach based on Peierls-Bogoliubov inequality for…
In contrast to strongly frustrated classical systems, their quantum counterparts typically have a non-degenerate ground state. A counterexample is the celebrated Heisenberg sawtooth spin chain with ferromagnetic zigzag bonds $J_1$ and…
The use of Mean-Field theory to unwrap principal phase patterns has been recently proposed. In this paper we generalize the Mean-Field approach to process phase patterns with arbitrary degree of undersampling. The phase unwrapping problem…
In a recent Letter, Gutin, Abkevich, and Shakhnovich (GAS) reported on a series of dynamical Monte Carlo simulations on lattice models of proteins. Based on these highly simplified models, they found that four different potential energies…
We have carried out a numerical simulation of a domain-wall model in $(2+1)$-dimensions, in the presence of a dynamical gauge field only in an extra dimension, corresponding to the weak coupling limit of a ( 2-dimensional ) physical gauge…
Ferroic domain walls are currently investigated by several state-of-the art techniques in order to get a better understanding of their distinct, functional properties. Here, Principal Component Analysis (PCA) of Raman maps is used to study…
We study a matrix model that has $\phi_a^i\ (a=1,2,\ldots,N,\ i=1,2,\ldots,R)$ as its dynamical variable, whose lower indices are pairwise contracted, but upper ones are not always done so. This matrix model has a motivation from a tensor…
Given the amino acid sequence of a protein, researchers often infer its structure and function by finding homologous, or evolutionarily-related, proteins of known structure and function. Since structure is typically more conserved than…
Residual marked empirical process-based tests are commonly used in regression models. However, they suffer from data sparseness in high-dimensional space when there are many covariates. This paper has three purposes. First, we suggest a…
This paper deepens into the analysis of the protein secondary structure using Frenet frame to describe the curvature and torsion of the discrete curve formed by the protein $\alpha$-carbons. We show how a simple criterion based on the…