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In this paper, we investigate the impact of noise on a simplified trained convolutional network. The types of noise studied originate from a real optical implementation of a neural network, but we generalize these types to enhance the…

Adaptation and Self-Organizing Systems · Physics 2025-06-24 Ivan Kolesnikov , Nadezhda Semenova

We consider a generic class of gene circuits affected by nonlinear extrinsic noise. To address this nonlinearity we introduce a general perturbative methodology based on assuming timescale separation between noise and genes dynamics, with…

Molecular Networks · Quantitative Biology 2023-05-10 Gerardo Aquino , Andrea Rocco

Here we study a noise induced transition when the system is driven by a noise source taken as colored and non-Gaussian. We show--using both, a theoretical approximation and numerical simulations-- that there is a shift of the transition as…

Statistical Mechanics · Physics 2009-11-10 Horacio S. Wio , Raul Toral

Similar to intelligent multicellular neural networks controlling human brains, even single cells surprisingly are able to make intelligent decisions to classify several external stimuli or to associate them. This happens because of the fact…

Molecular Networks · Quantitative Biology 2018-11-21 Russell Bates , Oleg Blyuss , Ahmed Alsaedi , Alexey Zaikin

The logistic differential equation is used to analyze cancer cell population, in the presence of a correlated Gaussian white noise. We study the steady state properties of tumor cell growth and discuss the effects of the correlated noise.…

Biological Physics · Physics 2007-05-23 Bao-Quan Ai , Xian-Ju Wang , Guo-Tao Liu , Liang-Gang Liu

We consider the effect of Gaussian white noise on fast-slow dynamical systems with one fast and two slow variables, containing a folded-node singularity. In the absence of noise, these systems are known to display mixed-mode oscillations,…

Dynamical Systems · Mathematics 2012-02-20 Nils Berglund , Barbara Gentz , Christian Kuehn

Due to inherent noise in intracellular networks cellular decisions can be random, so genetically identical cells can display different phenotypic behavior even in identical environments. Most previous work in understanding the…

Molecular Networks · Quantitative Biology 2015-06-15 Michael Assaf , Elijah Roberts , Zaida Luthey-Schulten , Nigel Goldenfeld

A system with two correlated Gaussian white noises is analysed. This system can describe both stochastic localization and long tails in the stationary distribution. Correlations between the noises can lead to a nonmonotonic behaviour of the…

Statistical Mechanics · Physics 2015-06-25 P. F. Gora

The ability to characterize the state of dynamic systems has been a pertinent task in the time series analysis community. Traditional measures such as Lyapunov exponents are often times difficult to recover from noisy data, especially if…

Signal Processing · Electrical Eng. & Systems 2020-12-21 Joshua Tempelman , Audun Myers , Jeffrey Scruggs , Firas Khasawneh

Most of the existing diffusion models use Gaussian noise for training and sampling across all time steps, which may not optimally account for the frequency contents reconstructed by the denoising network. Despite the diverse applications of…

Computer Vision and Pattern Recognition · Computer Science 2024-05-03 Xingchang Huang , Corentin Salaün , Cristina Vasconcelos , Christian Theobalt , Cengiz Öztireli , Gurprit Singh

In pattern forming systems such as Rayleigh-Benard convection or directional solidification, a large number of linearly stable, patterned steady states exist when the basic, simple steady state is unstable. Which of these steady states will…

patt-sol · Physics 2009-10-28 Douglas A. Kurtze

Extrinsic noise-induced transitions to bimodal dynamics have been largely investigated in a variety of chemical, physical, and biological systems. In the standard approach in physical and chemical systems, the key properties that make these…

Biological Physics · Physics 2020-11-10 Gerardo Aquino , Andrea Rocco

The dynamics of well-mixed biological populations is usually studied by mean-field methods and weak-noise expansions. Similar methods have been applied also in spatially extended problems, relying on the fact that these populations are…

Statistical Mechanics · Physics 2015-03-17 Luca Dall'Asta , Fabio Caccioli , Deborah Beghè

Genetically identical cells in the same population can take on phenotypically variable states, leading to differentiated responses to external signals, such as nutrients and drug-induced stress. Many models and experiments have focused on a…

Molecular Networks · Quantitative Biology 2015-04-28 Thierry Mora , Aleksandra M. Walczak

Gene expression is a noisy process that leads to regime shift between alternative steady states among individual living cells, inducing phenotypic variability. The effects of white noise on the regime shift in bistable systems have been…

Molecular Networks · Quantitative Biology 2017-08-23 Yogita Sharma , Partha Sharathi Dutta

We assess the impact of cell cycle noise on gene circuit dynamics. For bistable genetic switches and excitable circuits, we find that transitions between metastable states most likely occur just after cell division and that this…

Molecular Networks · Quantitative Biology 2016-12-21 Alan Veliz-Cuba , Chinmaya Gupta , Matthew R. Bennett , Krešimir Josić , William Ott

Coupling dynamics of the states of the nodes of a network to the dynamics of the network topology leads to generic absorbing and fragmentation transitions. The coevolving voter model is a typical system that exhibits such transitions at…

Physics and Society · Physics 2015-09-14 Marina Diakonova , Victor M. Eguiluz , Maxi San Miguel

We study the steady state properties of an insect (spruce budworm) outbreak model in the presence of Gaussian white noise. Based on the corresponding Fokker-Planck equation the steady state solution of the probability distribution function…

Biological Physics · Physics 2007-05-23 Bao-Quan Ai , Wei Chen , Xian-Ju Wang , Guo-Tao Liu , De-Hua Wen , Hui-Zhang Xie , Liang-Gang Liu

We consider signal transaction in a simple neuronal model featuring intrinsic noise. The presence of noise limits the precision of neural responses and impacts the quality of neural signal transduction. We assess the signal transduction…

Biological Physics · Physics 2015-03-17 Michael J. Barber , Manfred L. Ristig

We study the effects of noise on the collective dynamics of an ensemble of coupled phase oscillators whose natural frequencies are all identical, but whose coupling strengths are not the same all over the ensemble. The intensity of noise…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Damian H. Zanette
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