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It is well known that fewest-switches surface hopping (FSSH) fails to correctly capture the quadratic scaling of rate constants with diabatic coupling in the weak-coupling limit, as expected from Fermi's golden rule and Marcus theory. To…

Chemical Physics · Physics 2023-11-16 Joseph E. Lawrence , Jonathan R. Mannouch , Jeremy O. Richardson

I describe the theoretical progress in the study of semileptonic tree-level B decays, and its interplay with recent experimental results. In particular, I focus on two anomalies: the ratios $R(D^{(*)})=\displaystyle\frac{{\cal B}(B \to…

High Energy Physics - Phenomenology · Physics 2017-11-10 Fulvia De Fazio

We theoretically study transport properties in one-dimensional interacting quasiperiodic systems at infinite temperature. We compare and contrast the dynamical transport properties across the many-body localization (MBL) transition in…

Disordered Systems and Neural Networks · Physics 2017-09-21 F. Setiawan , Dong-Ling Deng , J. H. Pixley

We study the number entropy and quasiparticle width in one-dimensional quasiperiodic many-body localized (MBL) systems and observe slow dynamics that have previously been investigated in detail only in random systems. In contrast,…

Disordered Systems and Neural Networks · Physics 2026-05-06 Bernard Faulend , Hrvoje Buljan , Antonio Štrkalj

We study a coarsening process of one-dimensional cell complexes. We show that if cell boundaries move with velocities proportional to the difference in size of neighboring cells, then the average cell size grows at a prescribed exponential…

Probability · Mathematics 2015-12-03 Emanuel Lazar , Robin Pemantle

A naive application of the heavy quark expansion (HQE) yields theory estimates for the decay rate of neutral $D$ mesons that are four orders of magnitude below the experimental determination. It is well known that this huge suppression…

High Energy Physics - Phenomenology · Physics 2020-11-18 Alexander Lenz , Maria Laura Piscopo , Christos Vlahos

Fitness effects of mutations fall on a continuum ranging from lethal to deleterious to beneficial. The distribution of fitness effects (DFE) among random mutations is an essential component of every evolutionary model and a mathematical…

Populations and Evolution · Quantitative Biology 2011-05-04 C Scott Wylie , Eugene I Shakhnovich

Significant fraction (98.5% in humans) of most animal genomes is non- coding dark matter. Its largely unknown function (1-5) is related to programming (rather than to spontaneous mutations) of accurate adaptation to rapidly changing…

Genomics · Quantitative Biology 2007-08-02 Mark Ya. Azbel

The central question of systems biology is to understand how individual components of a biological system such as genes or proteins cooperate in emerging phenotypes resulting in the evolution of diseases. As living cells are open systems in…

Quantitative Methods · Quantitative Biology 2019-08-20 Jeyashree Krishnan , Reza Torabi , Edoardo Di Napoli , Andreas Schuppert

Many ecological studies and conservation policies are based on field observations of species, which can be affected by systematic variability introduced by the observation process. A recently introduced causal modeling technique called…

Methodology · Statistics 2021-01-05 Shiv Shankar , Daniel Sheldon , Tao Sun , John Pickering , Thomas G. Dietterich

Cellular tissue behavior is a multiscale problem. At the cell level, out of equilibrium, biochemical reactions drive physical cell-cell interactions in a typical active matter process. Cell modeling computer simulations are a robust tool to…

Soft Condensed Matter · Physics 2021-02-09 Emanuel F. Teixeira , Heitor C. M. Fernandes , Leonardo G. Brunnet

This paper argues that continued AI scaling requires repeated efficiency doublings. Classical AI scaling laws remain useful because they make progress predictable despite diminishing returns, but the compute variable in those laws is best…

Machine Learning · Computer Science 2026-04-10 Chien-Ping Lu

An important question in biology is how the relative size of different organs is kept nearly constant during growth of an animal. This property, called proportionate growth, has received increased attention in recent years. We discuss our…

Statistical Mechanics · Physics 2014-11-18 Tridib Sadhu , Deepak Dhar

In light of the recent data for $\bar{B}_{(s)}\to D^{(*)}_{(s)}P$ and $\bar{B}_{(s)}\to D_{(s)}V$ decays, we perform a model-independent phenomenological analysis in the presence of quasi-elastic rescattering. With the Wilson coefficients…

High Energy Physics - Phenomenology · Physics 2025-06-24 Albertus Hariwangsa Panuluh , Satoshi Tanaka , Hiroyuki Umeeda

In Bayesian statistics, one's prior beliefs about underlying model parameters are revised with the information content of observed data from which, using Bayes' rule, a posterior belief is obtained. A non-trivial example taken from the…

High Energy Physics - Phenomenology · Physics 2007-05-23 J. Charles , A. Hocker , H. Lacker , F. R. Le Diberder , S. T'Jampens

Microswimmers typically operate in complex environments. In biological systems, often diverse species are simultaneously present and interact with each other. Here, we derive a (time-dependent) particle-scale statistical description, namely…

Soft Condensed Matter · Physics 2019-08-13 Christian Hoell , Hartmut Löwen , Andreas M. Menzel

This paper proposes a mathematical model for replicating a simple dynamics in an aquarium with two components; bacteria and organic matter. The model is based on a system of partial differential equations (PDEs) with four components: the…

Analysis of PDEs · Mathematics 2024-01-23 Ken Furukawa , Hiroyuki Kitahata

Swimming is ubiquitous in nature and crucial for the survival of a wide range of organisms. The physics of swimming at the viscosity-dominated microscale and inertia-dominated macroscale is well studied. However, in between lies a…

A prime example of non-equilibrium or active environment is a biological cell. In order to understand in-vivo functioning of biomolecules such as proteins, chromatins, a description beyond equilibrium is absolutely necessary. In this…

Soft Condensed Matter · Physics 2019-03-27 Subhasish Chaki , Rajarshi Chakrabarti

Across metazoans, early embryos exhibit a strikingly conserved slowing down of their cell duplication speed, despite widely varying developmental paces and underlying molecular mechanisms. Here we show that this common behavior arises…