English
Related papers

Related papers: Zipf's Law in Gene Expression

200 papers

The Zipf's law establishes that if the words of a (large) text are ordered by decreasing frequency, the frequency versus the rank decreases as a power law with exponent close to $-1$. Previous work has stressed that this pattern arises from…

Physics and Society · Physics 2019-04-03 Felipe Urbina , Javier Vera

The growth dynamics of complex systems often exhibit statistical regularities involving power-law relationships. For real finite complex systems formed by countable tokens (animals, words) as instances of distinct types (species, dictionary…

Physics and Society · Physics 2026-03-31 Pablo Rosillo-Rodes , Laurent Hébert-Dufresne , Peter Sheridan Dodds

In a prime number decomposition of integers in a given set, the occurrence frequencies of prime numbers are shown to satisfy a general forms of Zipf's law.

Physics and Society · Physics 2024-03-20 Helmut Satz

As the most fundamental empirical law, Zipf's law has been studied from many aspects. But its meaning is still an open problem. Some models have been constructed to explain Zipf's law. In the letter, a new concept named nonsymmetric entropy…

Disordered Systems and Neural Networks · Physics 2007-05-23 Chengshi Liu

Multicellular organisms comprise a diverse collection of stable tissues built from different cell types. It remains unclear how large numbers of interacting cells can precisely coordinate their gene expression during tissue…

Biological Physics · Physics 2022-10-31 Matthew Smart , Anton Zilman

Cell growth and gene expression, essential elements of all living systems, have long been the focus of biophysical interrogation. Advances in single-cell methods have invigorated theoretical studies into these processes. However, until…

Subcellular Processes · Quantitative Biology 2023-11-22 Ido Golding , Ariel Amir

New experimental methods make it possible to measure the expression levels of many genes, simultaneously, in snapshots from thousands or even millions of individual cells. Current approaches to analyze these experiments involve clustering…

Background: Zipf's discovery that word frequency distributions obey a power law established parallels between biological and physical processes, and language, laying the groundwork for a complex systems perspective on human communication.…

Computation and Language · Computer Science 2009-11-11 Eduardo G. Altmann , Janet B. Pierrehumbert , Adilson E. Motter

We consider a system composed of a fixed number of particles with total energy smaller or equal to some prescribed value. The particles are non-interacting, indistinguishable and distributed over fixed number of energy levels. The energy…

Probability · Mathematics 2021-03-23 Tomasz M. Łapiński

Gene expression is a central process to any form of life. It involves multiple temporal and functional scales that extend from specific protein-DNA interactions to the coordinated regulation of multiple genes in response to intracellular…

Molecular Networks · Quantitative Biology 2013-07-11 Jose M. G. Vilar , Leonor Saiz

We inspect the deductive connection between the neural scaling law and Zipf's law -- two statements discussed in machine learning and quantitative linguistics. The neural scaling law describes how the cross entropy rate of a foundation…

Information Theory · Computer Science 2025-12-23 Łukasz Dębowski

We present empirical data on frequency and pattern of misprints in citations to twelve high-profile papers. We find that the distribution of misprints, ranked by frequency of their repetition, follows Zipf's law. We propose a stochastic…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. V. Simkin , V. P. Roychowdhury

The statistical characterization of the distribution of visible matter in the universe is a central problem in modern cosmology. In this respect, a crucial question still lacking a definitive answer concerns how large are the greatest…

Cosmology and Nongalactic Astrophysics · Physics 2021-07-28 Giordano De Marzo , Francesco Sylos Labini , Luciano Pietronero

In this paper we will look at the distribution with which passwords are chosen. Zipf's Law is commonly observed in lists of chosen words. Using password lists from four different on-line sources, we will investigate if Zipf's law is a good…

Cryptography and Security · Computer Science 2015-09-02 David Malone , Kevin Maher

Zipf's law is found when the vocabulary of long written texts is ranked according to the frequency of word occurrences, establishing a power-law decay for the frequency vs rank relation. This law is a robust statistical property observed…

Physics and Society · Physics 2020-02-17 Juan Ignacio Perotti , Orlando Vito Billoni

Zipf's law of city-size distributions can be expressed by three types of mathematical models: one-parameter form, two-parameter form, and three-parameter form. The one-parameter and one of the two-parameter models are familiar to urban…

Physics and Society · Physics 2018-12-19 Yanguang Chen

We model the generation of words with independent unequal probabilities of occurrence of letters. We prove that the probability $p(r)$ of occurrence of words of rank $r$ has a power asymptotics. As distinct from the paper published earlier…

Statistics Theory · Mathematics 2016-05-27 V. V. Bochkarev , E. Yu. Lerner

Apparently random events in nature often reveal hidden patterns when analysed using diverse and robust statistical tools. Power-law distributions, for example, project diverse natural phenomenon, ranging from earthquakes1 to heartbeat…

This paper studies the limits of language models' statistical learning in the context of Zipf's law. First, we demonstrate that Zipf-law token distribution emerges irrespective of the chosen tokenization. Second, we show that Zipf…

Computation and Language · Computer Science 2022-11-22 Elizaveta Zhemchuzhina , Nikolai Filippov , Ivan P. Yamshchikov

Usually, the study of city population distribution has been reduced to power laws. In such analysis, a common practice is to consider cities with more than one hundred thousand inhabitants. Here, we argue that the distribution of cities for…

Statistical Mechanics · Physics 2009-11-07 L. C. Malacarne , R. S. Mendes , E. K. Lenzi