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The effects of a boundary on reaction systems are examined in the framework of the general single-species reaction/coalescence process. The boundary naturally represents the reactants' container, but is applicable to exciton dynamics in a…
We explore the interplay between tunneling process and chiral interactions in the discrimination of chiral states for an ensemble of molecules in a biological environment. Each molecule is described by an asymmetric double-well potential…
We study properties of a piecewise deterministic Markov process modeling the changes in concentration of specific antibodies. The evolution of densities of the process is described by a stochastic semigroup. The long-time behaviour of this…
We investigate the late-time evolution of the Universe within a cosmological model in which dark matter and dark energy are identified with two interacting scalar fields. Using methods of qualitative analysis of dynamical systems, we…
Self-Interacting Dark Matter models can successfully explain dark matter (DM) production through interactions confined within the dark sector. However, they often lack measurable experimental signals due to their secluded nature. Including…
The reaction dynamics of axisymmetric deformed $^{24}$Mg + $^{24}$Mg collisions have been investigated systematically by an isospin-dependent quantum molecular dynamics (IDQMD) model. It is found that different deformations and orientations…
In this paper we study the homogenization of a stochastic process and its associated evolution equations in which we mix a local part (given by a Brownian motion with a reflection on the boundary) and a nonlocal part (given by a jump…
Mechanisms of immunity, and of the host-pathogen interactions in general are among the most fundamental problems of medicine, ecology, and evolution studies. Here, we present a microscopic, protein-level, sequence-based model of immune…
Motivated by a recent optical-lattice experiment by Choi et al.[Science 352, 1547 (2016)], we discuss how domain-wall melting can be used to investigate many-body localization. First, by considering noninteracting fermion models, we…
Individual-based models of chemical or biological dynamics usually consider individual entities diffusing in space and performing a birth-death type dynamics. In this work we study the properties of a model in this class where the birth…
Reaction-diffusion models have been used over decades to study biological systems. In this context, evolution equations for probability distribution functions and the associated stochastic differential equations have nowadays become…
Structural transformations at interfaces are of profound fundamental interest as complex examples of phase transitions in low-dimensional systems. Despite decades of extensive research, no compelling evidence exists for structural…
A coarsened model for a binary system with limited miscibility of components is proposed; the system is described in terms of structural states in small parts of the material. The material is assumed to have two alternative types of…
Large-scale recordings of neuronal activity make it possible to gain insights into the collective activity of neural ensembles. It has been hypothesized that neural populations might be optimized to operate at a 'thermodynamic critical…
The demixing of two-component fermions in optical lattices under a spin-dependent external potential is investigated using the density-matrix renormalization group method. The influence of on-site interactions (u) and the ratio of the…
We demonstrate how to describe in an unified way early and late-time acceleration in the context of mimetic $F(R)$ gravity. As we show, an exponential $F(R)$ gravity model has appealing features, with regard to unification, and we perform…
The dynamic response functions of strongly interacting fermion gas in homogeneous space are investigated in a virial expansion to second order. The density response function exhibits transition from atomic to molecular response, as the…
Dynamical density functional simulations reveal structural aspects of crystal nucleation in undercooled liquids: the first appearing solid is amorphous, which promotes the nucleation of bcc crystals, but suppresses the appearance of the fcc…
The similarity between the dark matter and baryon energy densities suggests an existence of a dark sector analogous to QCD. In addition, small-scale structure anomalies can be addressed by dark matter self-interactions with cross sections…
An evolving yeast colony is simulated by means of a cellular automaton that takes care of many important features of the system under study. A complete survey of the properties of the colony is done and a set of scaling relations is found,…