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Fluid-structure interactions between active and passive components are important for many biological systems to function. A particular example is chromatin in the cell nucleus, where ATP-powered processes drive coherent motions of the…
We show how to simulate a model of many molecules with both strong coupling to many vibrational modes and collective coupling to a single photon mode. We do this by combining process tensor matrix product operator methods with a mean-field…
We analyze the nonlinear active microrheology of dense colloidal suspensions using a schematic model of mode-coupling theory. The model describes the strongly nonlinear behavior of the microscopic friction coefficient as a function of…
Multiscale dynamics are ubiquitous in applications of modern science. Because of time scale separation between relatively small set of slowly evolving variables and (typically) much larger set of rapidly changing variables, direct numerical…
Nonlinear reaction-diffusion systems admit a wide variety of spatiotemporal patterns or structures. In this lecture, we point out that there is certain advantage in studying discrete arrays, namely cellular neural/nonlinear networks (CNNs),…
In this paper, we employ a combination of analytical and numerical techniques to investigate the dynamics of lattice envelope vector soliton solutions propagating within a one-dimensional chain of flexible mechanical metamaterial. To model…
The connection between domain relaxations at individual scales and the collective heterogeneous response in non-equilibrium systems is a topic of profound interest in recent times. In a model sys- tem of constantly driven oppositely charged…
In this paper, we study pairs of oscillators that are indirectly coupled via active (excitable) cells. We introduce a scalar phase model for coupled oscillators and excitable cells. We first show that one excitable and one oscillatory cell…
In this work, we present a computational formulation based on continuum mechanics to study the interaction of fluid membranes embedded with semiflexible filaments. This is motivated by systems in membrane biology, such as cytoskeletal…
This Chapter contains an overview of the effects of nonlinear interactions in selected problems of non-equilibrium statistical mechanics. Most of the emphasis is put on open setups, where energy is exchanged with the environment. With…
It is well known that the dynamics of a Hamiltonian system depends crucially on whether or not it possesses nonlinear resonances. In the generic case, the set of nonlinear resonances consists of independent clusters of resonantly…
A variety of models for the membrane-mediated interaction of particles in lipid membranes, mostly well-established in theoretical physics, is reviewed from a mathematical perspective. We provide mathematically consistent formulations in a…
We report numerical investigations of wave turbulence in a vibrating plate. The possibility to implement advanced measurement techniques and long time numerical simulations makes this system extremely valuable for wave turbulence studies.…
We consider a non-linear system modelling the dynamics of a linearly elastic body immersed in an incompressible viscous fluid, without damping on the elastic part. We prove local existence of strong solutions and global existence and…
Nonequilibrium steady states in driven diffusive systems exhibit many features which are surprising or counterintuitive, given our experience with equilibrium systems. We introduce the prototype model and review its unusual behavior in…
We present results from a study of the nonlinear intermodal coupling between different flexural vibrational modes of a single high-stress, doubly-clamped silicon nitride nanomechanical beam. The measurements were carried out at 100 mK and…
The coupled-mode theory is developed for description of the nonlinear wave dynamics in binary optical lattices. The obtained equations of motion accurately describe nonlinear wave dynamics close to the band edges and in the gap of the…
We consider two linearly coupled masses, where one mass can have inelastic impacts with a fixed, rigid stop. This leads to the study of a two degree of freedom, piecewise linear, frictionless, unforced, constrained mechanical system. The…
Numerical modelling of several coupled passive linear dynamical systems (LDS) is considered. Since such component systems may arise from partial differential equations, transfer function descriptions, lumped systems, measurement data, etc.,…
We demonstrate that pulses of linear physical systems, weakly perturbed by nonlinear dissipation, exhibit soliton-like behavior in fast collisions. The behavior is demonstrated for linear waveguides with weak cubic loss and for systems…