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One way in which the human immunodeficiency virus (HIV-1) replicates within a host is by infecting activated CD4+ T-cells, which then produce additional copies of the virus. Even with the introduction of antiretroviral drug therapy, which…

Dynamical Systems · Mathematics 2016-04-18 Stephen Pankavich

When highly active antiretroviral therapy is administered for long periods of time to HIV-1 infected patients, most patients achieve viral loads that are ``undetectable'' by standard assay (i.e., HIV-1 RNA $ < 50$ copies/ml). Yet despite…

Populations and Evolution · Quantitative Biology 2012-11-20 Laura E. Jones , Alan S. Perelson

We report a first in modeling and simulation of the effects of the HIV proteins on the (caspase dependent) apoptotic pathway in infected cells. This work is novel and is an extension on the recent reports and clarifications on the FAS…

Molecular Networks · Quantitative Biology 2007-05-23 John Jack , Andrei Paun

In previous work, we studied host response to a pathogen which uses a cycle of immunologically distinct stages to establish and maintain infection. We showed that for generic parameter values, the system has a unique biologically meaningful…

Populations and Evolution · Quantitative Biology 2012-05-28 Michael Shapiro , Edgar Delgado-Eckert

Combination Antiretroviral Therapy (cART) succeeds to control viral replication in most HIV infected patients. This is normally followed by a reconstitution of the CD4$^+$ T cells pool; however, this does not happen for a substantial…

Applications · Statistics 2016-02-18 Ana Jarne , Daniel Commenges , Mélanie Prague , Yves Levy , Rodolphe Thiébaut

Knowledge of the time at which an HIV-infected individual seroconverts, when the immune system starts responding to HIV infection, plays a vital role in the design and implementation of interventions to reduce the impact of the HIV…

Applications · Statistics 2017-06-09 Loumpiana Koulai , Anne Presanis , Gary Murphy , Barbara Suligoi , Daniela De Angelis

The symmetrical network theory is a framework for understanding the immune system, that dates back to the mid 1970s. The symmetrical network theory is based on symmetrical stimulatory, inhibitory and killing interactions between clones that…

Populations and Evolution · Quantitative Biology 2008-12-31 Geoffrey W. Hoffmann

We propose a population model for TB-HIV/AIDS coinfection transmission dynamics, which considers antiretroviral therapy for HIV infection and treatments for latent and active tuberculosis. The HIV-only and TB-only sub-models are analyzed…

Optimization and Control · Mathematics 2015-04-16 Cristiana J. Silva , Delfim F. M. Torres

We propose a population model for HIV-TB co-infection dynamics by considering treatments for HIV infection, active tuberculosis and co-infection. The HIV only and TB only models are analyzed separately, as well as full model. The basic…

Populations and Evolution · Quantitative Biology 2018-08-10 Sachin Kumar , Shikha Jain

Human immunodeficiency virus (HIV-1 or simply HIV) induces a persistent infection, which in the absence of treatment leads to AIDS and death in almost all infected individuals. HIV infection elicits a vigorous immune response starting about…

Populations and Evolution · Quantitative Biology 2015-06-05 Vitaly V. Ganusov , Richard A. Neher , Alan S. Perelson

A dynamic model of non-lineal time-dependent ordinary differential equations (ODE) has been applied to the interactions of a HIV infection with the immune system cells. This model has been simplified into two compartments: lymph node and…

Cell Behavior · Quantitative Biology 2020-08-07 Miguel Ramos Pascual

Safe and effective preventive vaccines have the potential to help stem the HIV epidemic. The efficacy of such vaccines is typically measured in randomized, double-blind phase IIb/III trials and described as a reduction in newly acquired HIV…

Methodology · Statistics 2024-10-10 Yutong Jin , Alex Luedtke , Zoe Moodie , Holly Janes , David Benkeser

HIV-1 can disseminate between susceptible cells by two mechanisms: cell-free infection following fluid-phase diffusion of virions and by highly-efficient direct cell-to-cell transmission at immune cell contacts. The contribution of this…

Populations and Evolution · Quantitative Biology 2024-01-02 Changwang Zhang , Shi Zhou , Elisabetta Groppelli , Pierre Pellegrino , Ian Williams , Persephone Borrow , Benjamin M. Chain , Clare Jolly

Tuberculosis (TB) and human immunodeficiency virus (HIV) can be considered a deadly human syndemic. In this article, we formulate a model for TB and HIV transmission dynamics. The model considers both TB and acquired immune deficiency…

Dynamical Systems · Mathematics 2014-07-15 Cristiana J. Silva , Delfim F. M. Torres

The search to understand how the HIV virus spreads inside the human body and how the immune response works to control it has motivated studies related to Mathematical Immunology. Actually, researches include the idea of mathematical models…

Populations and Evolution · Quantitative Biology 2016-01-19 Marcelo Margon Rossi , Luis Fernandez Lopez

Infection by many viruses begins with fusion of viral and cellular lipid membranes, followed by entry of viral contents into the target cell and ultimately, after many biochemical steps, integration of viral DNA into that of the host cell.…

Quantitative Methods · Quantitative Biology 2018-05-10 Bhaven Mistry , Maria R. D'Orsogna , Nicholas E. Webb , Benhur Lee , Tom Chou

Introduction. Can the infection due to the human immunodeficiency virus type 1 induce a change in the differentiation status or process in T cells?. Methods. We will consider two stochastic Markov chain models, one which will describe the…

Molecular Networks · Quantitative Biology 2021-02-09 Alfonso Vivanco-Lira , José-Raúl Nieto-Saucedo

Myriad experiments have identified an important role for $\rm CD8^+$ T cell response mechanisms in determining recovery from influenza A virus infection. Animal models of influenza infection further implicate multiple elements of the immune…

We use a cellular automata model to study the evolution of HIV infection and the onset of AIDS. The model takes into account the global features of the immune response to any pathogen, the fast mutation rate of the HIV and a fair amount of…

Statistical Mechanics · Physics 2009-10-31 Rita Maria Zorzenon dos Santos , Sergio Coutinho

Hepatitis B virus is a global health threat, and its elimination by 2030 has been prioritised by the World Health Organisation. Here we present an age-structured model for the immune response to an HBV infection, which takes into account…

Quantitative Methods · Quantitative Biology 2021-08-05 Farzad Fatehi , Richard J. Bingham , Eric C. Dykeman , Peter G. Stockley , Reidun Twarock
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