Related papers: The ideal trefoil knot
The most tight conformations of prime knots are found with the use of the SONO algorithm. Their curvature and torsion profiles are calculated. Symmetry of the knots is analysed. Connections with the physics of polymers are discussed.
The shape of the most tight trefoil knot with N=200640 vertices found with an appropriately modified finite element method is analyzed. The high number of vertices makes plots of its curvature and torsion very precise what allows the…
We perform a compare-and-contrast investigation between the equilibrium shapes of physical and ideal trefoil knots, both in closed and open configurations. Ideal knots are purely geometric abstractions for the tightest configuration tied in…
A physical interpretation of the rope simulated by the SONO algorithm is presented. Properties of the tight polygonal knots delivered by the algorithm are analyzed. An algorithm for bounding the ropelength of a smooth inscribed knot is…
We report on new numerical computations of the set of self-contacts in tightly knotted tubes of uniform circular cross-section. Such contact sets have been obtained before for the trefoil and figure eight knots by simulated annealing -- we…
Knots across various length scales, from micro to macro-scales, such as polymers, DNA, shoelaces, and surgery, serving their unique mechanical properties. The shape of ideal knots has been extensively studied in the context of knot theory,…
We study local conformational biases in the dynamics of {\alpha}-synuclein by using all-atom simulations with explicit and implicit solvents. The biases are related to the frequency of the specific contact formation. In both approaches, the…
A coarse-grained computational model is used to investigate how the bending rigidity of a polymer under tension affects the formation of a trefoil knot. Thermodynamic integration techniques are applied to demonstrate that the free-energy…
The interplay between the topological and geometrical properties of a polymer ring can be clarified by establishing the entanglement trapped in any portion (arc) of the ring. The task requires to close the open arcs into a ring, and the…
We study the equilibrium shapes of prime and composite knots confined to two dimensions. Using rigorous scaling arguments we show that, due to self-avoiding effects, the topological details of prime knots are localised on a small portion of…
We derive solutions of the Kirchhoff equations for a knot tied on an infinitely long elastic rod subjected to combined tension and twist. We consider the case of simple (trefoil) and double (cinquefoil) knots; other knot topologies can be…
In this paper we provide a combinatorial tool to help study some topological properties of modular knots. We construct templates for the infinitely many Anosov flows on the trefoil complement, which are lifts of the geodesic flow on the…
It is known that every nontrivial knot has at least two quadrisecants. Given a knot, we mark each intersection point of each of its quadrisecants. Replacing each subarc between two nearby marked points with a straight line segment joining…
We investigate the elastic behavior of knotted loops of springy wire. To this end we minimize the classic bending energy $E_{\text{bend}}=\int\kappa^2$ together with a small multiple of ropelength $\mathcal R=\text{length}/\text{thickness}$…
Topological nodal-line semimetals are characterized by one-dimensional lines of band crossing in the Brillouin zone. In contrast to nodal points, nodal lines can be in topologically nontrivial configurations. In this paper, we study the…
A knot theoretic algorithm is proposed to model `fragile topology' of quantum physics.
We show that if a Montesinos knot admits a Dehn surgery yielding a toroidal Seifert fibered 3-manifold, then the knot is the trefoil knot and the surgery slope is 0.
We study simple, knotted and linked torus windings that are made of tubes of finite thickness. Knots which have the shortest rope length are often denoted ideal structures. Conventionally, the ideal structure are found by rope shortening…
The ropelength of a knot is the quotient of its length by its thickness. We consider a family of energy functions for knots, depending on a power p, which approach ropelength as p increases. We describe a numerically computed trefoil knot…
We construct an algorithm that lists all closed essential surfaces in the complement of a knot that lies on the fiber of a trefoil or figure eight knot. Such knots are Berge knots and hence admit lens space surgeries. Furthermore they may…