Related papers: Tight open knots
This is a survey paper on algorithms for solving problems in 3-dimensional topology. In particular, it discusses Haken's approach to the recognition of the unknot, and recent variations.
The (isothermic) compressibility of lattice knots can be examined as a model of the effects of topology and geometry on the compressibility of ring polymers. In this paper, the compressibility of minimal length lattice knots in the simple…
I briefly discuss a method of obtaining distinct classes of topologically equivalent knots by developing appropriate computer programs.
After Dirac introduced the monopole, topological objects have played increasingly important roles in physics. In this review we discuss the role of the knot, the most sophisticated topological object in physics, and related topological…
We study a coverings of open books and virtually overtwisted contact manifolds using open book foliations. We show that open book coverings produces interesting examples such as transverse knots with depth grater than 1. We also demonstrate…
We investigate the geometry of hyperbolic knots and links whose diagrams have a high amount of twisting of multiple strands. We find information on volume and certain isotopy classes of geodesics for the complements of these links, based…
We present a high-accuracy procedure for electronic structure calculations of strongly correlated materials. To address limitations in current electronic structure methods, we employ density functional theory in combination with the…
Let T be a rooted tree and Iso(T) be the group of isometries of T. Using model-theoretic tools we study closed subgroups G of Iso(T) with respect to the number of conjugacy classes of Iso(T) having representatives in G.
We give statistical definitions of the length, l, of a loose prime knot tied into a long, fluctuating ring macromolecule. Monte Carlo results for the equilibrium, good solvent regime show that < l > ~ N^t, where N is the ring length and t ~…
We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…
Prime power fold cyclic branched covers along smoothly slice knots all bound rational homology balls. This phenomenon, however, does not characterize slice knots. In this paper, we give a new construction of non-slice knots that have the…
We present a practical algorithm to test whether a 3-manifold given by a triangulation or an ideal triangulation contains a closed essential surface. This property has important theoretical and algorithmic consequences. As a testament to…
The topological underpinnings are presented for a new algorithm which answers the question: `Is a given knot the unknot?' The algorithm uses the braid foliation technology of Bennequin and of Birman and Menasco. The approach is to consider…
Let T denote the group of smooth concordance classes of topologically sice knots. We show that the first quotient in the bipolar filtration of T (i.e. 0-bipolar knots modulo 1-bipolar knots) has infinite rank, even modulo Alexander…
We explore more the properties of bipartite knots and its rich combinatorial structure.
Soft slender structures are ubiquitous in natural and artificial systems and can be observed at scales that range from the nanometric to the kilometric, from polymers to space tethers. We present a practical numerical approach to simulate…
We examine computer experiments that can be performed to understand the dynamics of knots under self-repulsion. In the course of specific computer exploration we use the knot theory of rational knots and rational tangles to produce classes…
We probe the character of knotting in open, confined polymers, assigning knot types to open curves by identifying their projections as virtual knots. In this sense, virtual knots are transitional, lying in between classical knot types,…
Understanding the biological function of knots in proteins and their folding process is an open and challenging question in biology. Recent studies classify the topology and geometry of knotted proteins by analysing the distribution of a…
Over the years, advances in experimental and computational methods have helped us to understand the role of thermodynamic, kinetic and active (chaperone-aided) effects in coordinating the folding steps required to achieving a knotted native…