Related papers: Why the 3D Writhe of Ideal Knots and Links Is Quan…
The values of writhe of the most tight conformations, found by the SONO algorithm, of all alternating prime knots with up to 10 crossings are analysed. The distribution of the writhe values is shown to be concentrated around the equally…
We model the typical behavior of knots and links using grid diagrams. Links are ubiquitous in the sciences, and their "normal" or "typical" behavior is of significant importance in understanding situations such as the topological state of…
The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo…
We study simple, knotted and linked torus windings that are made of tubes of finite thickness. Knots which have the shortest rope length are often denoted ideal structures. Conventionally, the ideal structure are found by rope shortening…
The ropelength of a knot is the minimum length required to tie it. Computational upper bounds have previously been computed for every prime knot with up to 11 crossings. Here, we present ropelength measurements for the 2176 knots with 12…
We make use of the 3D nature of knots and links to find savings in computational complexity when computing knot invariants such as the linking number and, in general, most finite type invariants. These savings are achieved in comparison…
This paper builds a novel bridge between algebraic coding theory and mathematical knot theory, with applications in both directions. We give methods to construct error-correcting codes starting from the colorings of a knot, describing…
It has been conjectured that the geometric invariant of knots in 3-space called the width is nearly additive. That is, letting w(K) in N denote the width of a knot K in S^3, the conjecture is that w(K # K') = w(K) + w(K') - 2. We give an…
This paper discusses some geometric ideas associated with knots in real projective 3-space $\mathbb{R}P^3$. These ideas are borrowed from classical knot theory. Since knots in $\mathbb{R}P^3$ are classified into three disjoint classes, -…
A ribbon is, intuitively, a smooth mapping of an annulus $S^1 \times I$ in 3-space having constant width $\varepsilon$. This can be formalized as a triple $(x,\varepsilon, \mathbf{u})$ where $x$ is smooth curve in 3-space and $\mathbf{u}$…
It has been suggested recently that knots might exist as stable soliton solutions in a simple three-dimensional classical field theory, opening up a wide range of possible applications in physics and beyond. We have re-examined and extended…
Knots across various length scales, from micro to macro-scales, such as polymers, DNA, shoelaces, and surgery, serving their unique mechanical properties. The shape of ideal knots has been extensively studied in the context of knot theory,…
We perform a compare-and-contrast investigation between the equilibrium shapes of physical and ideal trefoil knots, both in closed and open configurations. Ideal knots are purely geometric abstractions for the tightest configuration tied in…
We establish a Kauffman-Murasugi-Thistlethwaite-type theorem for alternating knots in a solid torus. Specifically, we show that any dotted-reduced alternating diagram of a knot in a handlebody realizes the minimal crossing number, and that…
The topological analysis of chaos based on a knot-theoretic characterization of unstable periodic orbits has proved a powerful method, however knot theory can only be applied to three-dimensional systems. Still, the core principles upon…
The primary objects of study in the ``knot theory of complex plane curves'' are C-links: links (or knots) cut out of a 3-sphere in the complex plane by complex plane transverse and totally tangential. Transverse C-links are naturally…
An invariant of knots is constructed from an integral for geometric braids due to Kohno and Kontsevich. It takes values in a quotient by a certain ideal of the algebra generated by chord diagrams over the circle.
The space writhe of a knot is a property of its three-dimensional embedding that contains information about its underlying topology, but the correspondence between space writhe and other topological invariants is not fully understood. We…
Using a model of idealized, crossed one-dimensional quantum wires we construct a novel model for a single electron on tunneling-coupled systems of one-dimensional quantum rings. We explore and find that topology can affect the energetics of…
Knots are commonly found in molecular chains such as DNA and proteins, and they have been considered to be useful models for structural analysis of these molecules. One interested quantity is the minimum number of monomers necessary to…