English
Related papers

Related papers: Predecessors of preprint servers

200 papers

The spreadsheet paradigm has some unique risks and challenges that are not present in more traditional development technologies. Many of the recent advances in other branches of software development have bypassed spreadsheets and…

Software Engineering · Computer Science 2024-12-31 Simon Murphy

Public data archives are the backbone of modern biological and biomedical research. While archives for biological molecules and structures are well-established, resources for imaging data do not yet cover the full range of spatial and…

Quantitative Methods · Quantitative Biology 2018-11-05 Jan Ellenberg , Jason R Swedlow , Mary Barlow , Charles E Cook , Ardan Patwardhan , Alvis Brazma , Ewan Birney

Manuscripts have a complex development process with multiple influencing factors. Reconstructing this process is difficult without large-scale, comparable data on different versions of manuscripts. Preprints are increasingly available and…

Digital Libraries · Computer Science 2022-02-01 Aliakbar Akbaritabar , Dimity Stephen , Flaminio Squazzoni

Many fields of science, including Human-Computer Interaction (HCI), have heightened introspection in the wake of concerns around reproducibility and replicability of published findings. Notably, in recent years the HCI community has worked…

Human-Computer Interaction · Computer Science 2025-08-06 Tatiana Chakravorti , Sanjana Gautam , Sarah M. Rajtmajer

With the advances in e-Sciences and the growing complexity of scientific analyses, more and more scientists and researchers are relying on workflow systems for process coordination, derivation automation, provenance tracking, and…

Software Engineering · Computer Science 2008-08-27 Yong Zhao , Ioan Raicu , Ian Foster

Many of the current scientific advances in the life sciences have their origin in the intensive use of data for knowledge discovery. In no area this is so clear as in bioinformatics, led by technological breakthroughs in data acquisition…

Machine Learning · Computer Science 2018-02-28 Davide Bacciu , Paulo J. G. Lisboa , José D. Martín , Ruxandra Stoean , Alfredo Vellido

Traditionally, the number of citations that a scholarly paper receives from other papers is used as the proxy of its scientific impact. Yet citations can come from domains outside the scientific community, and one such example is through…

Digital Libraries · Computer Science 2018-07-05 Qing Ke

This is a thought piece on data-intensive science requirements for databases and science centers. It argues that peta-scale datasets will be housed by science centers that provide substantial storage and processing for scientists who access…

Databases · Computer Science 2007-05-23 Jim Gray , David T. Liu , Maria Nieto-Santisteban , Alexander S. Szalay , David DeWitt , Gerd Heber

Scholarly communications have been rapidly integrated into digitised and networked open ecosystems, where preprint servers have played a pivotal role in accelerating the knowledge transfer processes. However, quantitative evidence is scarce…

Digital Libraries · Computer Science 2023-04-04 Keisuke Okamura

Biomedical research centers can empower basic discovery and novel therapeutic strategies by leveraging their large-scale datasets from experiments and patients. This data, together with new technologies to create and analyze it, has ushered…

Overlay journals are characterised by their articles being published on open access repositories, often already starting in their initial preprint form as a prerequisite for submission to the journal prior to initiating the peer-review…

Digital Libraries · Computer Science 2022-11-04 Antti Mikael Rousi , Mikael Laakso

More scientists are now using AI, but prior studies have examined only how they use it 'at the desk' for computer-based work. However, given that scientific work often happens 'beyond the desk' at lab and field sites, we conducted the first…

Human-Computer Interaction · Computer Science 2026-03-23 Irene Hou , Alexander Qin , Lauren Cheng , Philip J. Guo

Large Language Models (LLMs) are rapidly reshaping scientific research. We analyze these changes in multiple, large-scale datasets with 2.1M preprints, 28K peer review reports, and 246M online accesses to scientific documents. We find: 1)…

Digital Libraries · Computer Science 2026-01-21 Keigo Kusumegi , Xinyu Yang , Paul Ginsparg , Mathijs de Vaan , Toby Stuart , Yian Yin

Freely and openly shared low-cost electronic applications, known as open electronics, have sparked a new open-source movement, with much un-tapped potential to advance scientific research. Initially designed to appeal to electronic…

Quantitative Methods · Quantitative Biology 2022-07-14 Michael Oellermann , Jolle W. Jolles , Diego Ortiz , Rui Seabra , Tobias Wenzel , Hannah Wilson , Richelle Tanner

Preprints play an increasingly critical role in academic communities. There are many reasons driving researchers to post their manuscripts to preprint servers before formal submission to journals or conferences, but the use of preprints has…

Digital Libraries · Computer Science 2023-08-04 Jialiang Lin , Yao Yu , Yu Zhou , Zhiyang Zhou , Xiaodong Shi

The current system of scholarly publishing is often criticized for being slow, expensive, and not transparent. The rise of open access publishing as part of open science tenets, promoting transparency and collaboration, together with calls…

Digital Libraries · Computer Science 2024-11-12 Leon Kopitar , Nejc Plohl , Mojca Tancer Verboten , Gregor Štiglic , Roger Watson , Dean Korošak

In high energy physics, scholarly papers circulate primarily through online preprint archives based on a centralized repository, arXiv, that physicists simply refer to as "the archive". This is not just a tool for preservation and memory,…

Physics and Society · Physics 2016-06-24 Alessandro Delfanti

Computing in the life sciences has undergone a transformative evolution, from early computational models in the 1950s to the applications of artificial intelligence (AI) and machine learning (ML) seen today. This paper highlights key…

Other Quantitative Biology · Quantitative Biology 2024-06-21 Samuel A. Donkor , Matthew E. Walsh , Alexander J. Titus

There is an increase in demand for organs as transplantation is becoming a common practice to elongate human life. To reach this demand, three-dimensional bioprinting is developing from prior knowledge of scaffolds, growth factors, etc.…

Tissues and Organs · Quantitative Biology 2022-12-29 Alicia Shin

Researchers in the field of biocomputing have, for many years, successfully "harvested and exploited" the natural world for inspiration in developing systems that are robust, adaptable and capable of generating novel and even "creative"…

Artificial Intelligence · Computer Science 2007-05-23 Jon Timmis , Martyn Amos , Wolfgang Banzhaf , Andy Tyrrell