Related papers: Elastic wave propagation along DNA
The propagation of an acoustic wave through two-phase porous media with spatial variation in porosity is studied. The evolutionary wave equation is derived, and the propagation of an acoustic wave is numerically analyzed in application to…
We present a phenomenological dynamical model able to describe the stretching features of the curve of DNA length vs applied force. As concerns the chain, the model is based on the discrete wormlike chain model with elastic modifications,…
We study the effects of the sequence on the propagation of nonlinear excitations in simple models of DNA, and how those effects are modified by noise. Starting from previous results on soliton dynamics on lattices defined by aperiodic…
To study the elastic properties of rod-like DNA nanostructures, we perform long simulations of these structure using the oxDNA coarse-grained model. By analysing the fluctuations in these trajectories we obtain estimates of the bend and…
We report a theoretical study of the electromagnetic waves (EWs) propagation through an array of superconducting qubits, i.e. coherent two-level systems, embedded in a low-dissipative transmission line. We focus on the near-resonant case as…
By combining analytical and numerical calculations, we investigate the minimal-energy shape of short DNA loops of approximately $100$ base pairs (bp). We show that in these loops the excess twist density oscillates as a response to an…
This paper is concerned with an asymptotic analysis of the dispersion relation for wave propagation in an elastic layer of uniform thickness. The layer is subject to an underlying simple shear deformation accompanied by an arbitrary uniform…
In this paper anisotropic and dispersive wave propagation within linear strain-gradient elasticity is investigated. This analysis reveals significant features of this extended theory of continuum elasticity. First, and contrarily to…
DNA supercoiling plays an important role in a variety of cellular processes. The torsional stress related with supercoiling may be also involved in gene regulation through the local structure and dynamics of the double helix. To check this…
We consider a heavy, uniform, elastic beam rested on periodically distributed supports as a simplified model of a bridge. The supports are subjected to a partial destruction propagating as a failure wave along the beam. Three related models…
Hydroelastic surface waves propagate at the surface of water covered by a thin elastic sheet and can be directly measured with accurate space and time resolution. We present an experimental approach using hydroelastic waves that allows us…
We present a self-contained theory for the mechanical response of DNA in single molecule experiments. Our model is based on a 1D continuum description of the DNA molecule and accounts both for its elasticity and for DNA-DNA electrostatic…
We investigate the electron (hole) transport through short double-stranded DNA wires in which the electrons are strongly coupled to the specific vibrational modes (vibrons) of the DNA. We analyze the problem starting from a tight-binding…
The free propagation of acoustic plane waves through cellular periodic materials is generally accompanied by a flow of mechanical energy across the adjacent cells. The paper focuses on the energy transport related to dispersive waves…
In classical mechanics, the motion of an object is described with Newton's three laws of motion, which means that the motion of the material elements composing a continuum can be described with the particle model. However, this viewpoint is…
The normal modes of a continuum solid endowed with a random distribution of line defects that behave like elastic strings are described. These strings interact with elastic waves in the bulk, generating wave dispersion and attenuation. As…
In the context of elastic wave propagation in damaged solids, an analytical approach for scattering of antiplane waves by two-dimensional periodic arrays of cracks is developed. Before considering the study of arrays of cracks, the…
The temperature dependence of DNA flexibility is studied in the presence of stretching and unzipping forces. Two classes of models are considered. In one case the origin of elasticity is entropic due to the polymeric correlations, and in…
We develop and study a 1D model for the acoustic wave propagation with two-phase physics and irreversible elastoplastic deformations in the rock matrix. We address the effect of the P-wave energy attenuation due to pore-scale plastic…
Nonreciprocal wave propagation allows for directional energy transport. In this work, we systematically investigate wave dynamics in an elastic lattice that combines nonreciprocal stiffness with viscous damping. After establishing how…