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Related papers: Crystalizing the genetic code

200 papers

How robust is the natural genetic code with respect to mistranslation errors? It has long been known that the genetic code is very efficient in limiting the effect of point mutation. A misread codon will commonly code either for the same…

Biological Physics · Physics 2009-11-03 Dimitri Gilis , Serge Massar , Nicolas Cerf , Marianne Rooman

Efficient heuristics have predicted many functional materials such as high-temperature superconducting hydrides, while inorganic structural chemistry explains why and how the crystal structures are stabilized. Here we develop the paired…

Materials Science · Physics 2024-11-07 Ryotaro Koshoji , Taisuke Ozaki

Clifford algebras are used for definition of spinors. Because of using spin-1/2 systems as an adequate model of quantum bit, a relation of the algebras with quantum information science has physical reasons. But there are simple mathematical…

Quantum Physics · Physics 2007-05-23 Alexander Yu. Vlasov

A powerful method for analyzing quantum error-correcting codes is to map them onto classical statistical mechanics models. Such mappings have thus far mostly focused on static codes, possibly subject to repeated syndrome measurements.…

Quantum Physics · Physics 2026-02-19 Cory T. Aitchison , Benjamin Béri

For the first time, the crystal structure of the Kob-Andersen mixture has been probed by genetic algorithms calculations. The stable structures of the system with different molar fractions of the components have been identified and their…

Soft Condensed Matter · Physics 2024-09-04 Yu. D. Fomin , N. M. Chtchelkatchev

Semiconductor architectures hold promise for quantum information processing (QIP) applications due to their large industrial base and perceived scalability potential. Electron spins in silicon in particular may be an excellent architecture…

Materials Science · Physics 2007-10-24 Charles Tahan

An experiment is proposed of non perturbative tunneling in a Quantum dot connected to leads in a pillar configuration, which would shed light on the physics of the mesoscopic Kondo problem. We propose for the first time that what is coupled…

Condensed Matter · Physics 2009-10-31 Domenico Giuliano , Arturo Tagliacozzo

We construct a new family of quantum MDS codes from classical generalized Reed-Solomon codes and derive the necessary and sufficient condition under which these quantum codes exist. We also give code bounds and show how to construct them…

Quantum Physics · Physics 2009-11-13 Zhuo Li , Li-Juan Xing , Xin-Mei Wang

Skyrmion crystals are the field configurations which minimize the energy per baryon in the infinitely large topological charge sector of the Skyrme model, at least for sufficiently high density. They are, therefore, an important tool to…

High Energy Physics - Theory · Physics 2022-05-04 Christoph Adam , Alberto Garcia Martin-Caro , Miguel Huidobro , Ricardo Vazquez , Andrzej Wereszczynski

Motivated by M\"obius transformation for symmetrical points under the generalized circle in complex plane, the system of symmetrical spin coherent states corresponding to antipodal qubit states is introduced. It implies the maximally…

Quantum Physics · Physics 2011-07-08 Oktay Pashaev , Zeynep Nilhan Gurkan

The standard genetic code is known to be robust to translation errors and point mutations. We studied how small modifications of the standard code affect its robustness. The robustness was assessed in terms of a proper stability function,…

Quantitative Methods · Quantitative Biology 2009-09-25 V. R. Chechetkin , V. V. Lobzin

This work represents the first chapter of a project on the foundations of first-principle calculations of the electron transport in crystals at finite temperatures. We are interested in the range of temperatures, where most electronic…

Computational Physics · Physics 2018-04-04 Thomas D. Kühne , Emil Prodan

We investigated the error-minimization properties of putative primordial codes that consisted of 16 supercodons, with the third base being completely redundant, using a previously derived cost function and the error minimization percentage…

Genomics · Quantitative Biology 2009-08-26 Artem S. Novozhilov , Eugene V. Koonin

We develop genetic algorithms for searching quantum circuits, in particular stabilizer quantum error correction codes. Quantum codes equivalent to notable examples such as the 5-qubit perfect code, Shor's code, and the 7-qubit color code…

Quantum Physics · Physics 2024-03-19 Daniel Tandeitnik , Thiago Guerreiro

Number-conserved subspace encoding reduces resources needed for quantum simulations, but scalable complexity trade-off bounds for $M$ modes and $N$ particles with $\mathcal{O}(N\log M)$ qubits have remained unknown. We study…

Quantum Physics · Physics 2025-09-23 M. H. Cheng , Yu-Cheng Chen , Qian Wang , V. Bartsch , M. S. Kim , Alice Hu , Min-Hsiu Hsieh

In this paper we generalize the quantum mechanical model of three coupled oscillators because of its usage in the crystal optical activity. Using this model we can include the influence of all essential couplings between single oscillators…

Materials Science · Physics 2009-10-31 I. Vysin , K. Svackova

Expanding genetic codes from natural standard nucleotides to artificial non-standard nucleotides marks a significant advancement in synthetic biology, with profound implications for biotechnology and medicine. Decoding the biological…

Genomics · Quantitative Biology 2024-09-17 Hyunjin Shim

We review the foundations and the applications of the statistical and the quark recombination model as hadronization models.

Nuclear Theory · Physics 2015-05-13 F. Becattini , R. Fries

It is show that in group representation by non-traditionally determining by the Maxwell equations, instead of wave, linear differential operator of momentous type from the common point of view the transformation of electromagnetic and…

General Physics · Physics 2016-04-19 Anatol G. Khatkevich , Lyudmila A. Khatkevich

In a certain way, this paper presents the continuation of the previous one which discussed the harmonic structure of the genetic code (Rakocevic, 2004). Several new harmonic structures presented in this paper, through specific unity and…

Other Quantitative Biology · Quantitative Biology 2007-05-23 Miloje M. Rakocevic