Related papers: Crystalizing the genetic code
In this paper we present the results of a systematic numerical analysis of the channeling properties of electrons and positrons in oriented straight and periodically bent diamond(110) crystals. We analyse dependence of the intensity of the…
Co-optimizing mRNA sequences for both codon optimality and secondary structure is crucial for producing stable and efficacious mRNA therapeutics. Codon optimization, which adjusts nucleotide sequences to enhance translational efficiency,…
Quantum codes are subspaces of the state space of a quantum system that are used to protect quantum information. Some common classes of quantum codes are stabilizer (or additive) codes, non-stabilizer (or non-additive) codes obtained from…
Although several synonymous codons can encode the same aminoacid, this symmetry is generally broken in natural genetic systems. In this article, we show that the symmetry breaking can result from selective pressures due to the violation of…
The genetic code structure into distinct multiplet-classes as well as the numeric degeneracies of the latter are revealed by a two-step process. First, an empirical inventory of the degeneracies (of the shuffled multiplets) in two specific…
It has been proposed that the degeneracy of the genetic code,i.e., the phenomenon that different codons (base triplets) of DNA are transcribed into the same amino acid, may be interpreted as the result of a symmetry breaking process. In the…
In this work it is shown that 20 canonical amino acids (AAs) within genetic code appear to be a whole system with strict distinction in Genetic Code Table (GCT) into some different quantums: 20, 23, 61 amino acid molecules. These molecules…
Motivated by the rapid experimental progress of quantum spin ice materials, we study the dynamical properties of pyrochlore spin ice in the U(1) spin liquid phases. In particular, we focus on the spinon excitations that appear at high…
Typical stabilizer codes aim to solve the general problem of fault-tolerance without regard for the structure of a specific system. By incorporating a broader representation-theoretic perspective, we provide a generalized framework that…
This paper develops a geometric model for coupled two-state quantum systems (qubits), which is formulated using geometric (aka Clifford) algebra. It begins by showing how Euclidean spinors can be interpreted as entities in the geometric…
We consider a one-dimensional system comprising of $N$ run-and-tumble particles confined in a harmonic trap interacting via a repulsive inverse-square power-law interaction. We numerically compute the global density profile in the steady…
The spinor representation of the quantum group $U_q(su(N))$ is given in terms of a set of fermion creation and annihilation operators. It is shown that the $q$-fermion operators introduced earlier can be identifi ed with the conventional…
Time crystals appear when systems display a commensurate spontaneous breaking of the discrete time translational invariance imposed by an external periodic drive. No consensus on the definition has been reached as yet, but important aspects…
The genetic code is considered to be universal. In order to test if some statistical properties of the coding bacterial genome were due to inherent properties of the genetic code, we compared the autocorrelation function, the scaling…
We study the higher spin anologs of the six vertex model on the basis of its symmetry under the quantum affine algebra $U_q(\slth)$. Using the method developed recently for the XXZ spin chain, we formulate the space of states, transfer…
In sexual population, recombination reshuffles genetic variation and produces novel combinations of existing alleles, while selection amplifies the fittest genotypes in the population. If recombination is more rapid than selection,…
In view of the critical behavior exhibited by a statistical model describing a one dimensional crystal containing isotopic impurities and the fact that for impurity mass parameter 3 times the host mass the critical temperature can attain…
Let $\mathcal{O}^{int}_q(m|n)$ be a semisimple tensor category of modules over a quantum ortho-symplectic superalgebra of type $B, C, D$ introduced in the author's previous work. It is a natural counterpart of the category of finitely…
For each $n\geqslant3$, we construct an uncountable family of models of the crystal of the basic $U_q(\hat{\mathfrak{sl}}_n)$-module. These models are all based on partitions, and include the usual $n$-regular and $n$-restricted models, as…
We study the ground state of a system of spinless electrons interacting through a screened Coulomb potential in a lattice ring. By using analytical arguments, we show that, when the effective interaction compares with the kinetic energy,…