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We study a simple two-dimensional model for motion of an elastic filament subject to internally generated stresses and show that wave-like propagating shapes which can propel the filament can be induced by a self-organized mechanism via a…

Soft Condensed Matter · Physics 2019-08-17 S. Camalet , F. Julicher , J. Prost

The diffusion of active microscopic organisms in complex environments plays an important role in a wide range of biological phenomena from cell colony growth to single organism transport. Here, we investigate theoretically and…

Fluid Dynamics · Physics 2018-01-16 Juan L. Aragones , Shahrzad Yazdi , Alfredo Alexander-Katz

We consider collective dynamics of self-propelling particles in two dimensions. They can align themselves according to the direction of propulsion of their neighbours, together with a random perturbation (i.e. rotational fluctuation). They…

Soft Condensed Matter · Physics 2019-04-01 Shubhashis Rana , Md. Samsuzzaman , Arnab Saha

The transition from single-cell to multicellular behavior is important in early development but rarely studied. The starvation-induced aggregation of the social amoeba Dictyostelium discoideum into a multicellular slug is known to result…

Cell Behavior · Quantitative Biology 2018-01-12 Giovanna De Palo , Darvin Yi , Robert G. Endres

We consider the ordered and disordered dynamics for monolayers of rolling self-interacting particles with an offset center of mass and a non-isotropic inertia tensor. The rolling constraint is considered as a simplified model of a very…

Computational Physics · Physics 2015-05-19 Byungsoo Kim , Vakhtang Putkaradze

Chemotaxis is a ubiquitous biological phenomenon in which cells detect a spatial gradient of chemoattractant, and then move towards the source. Here we present a position-dependent advection-diffusion model that quantitatively describes the…

Biological Physics · Physics 2018-04-06 Zahra Eidi , Farshid Mohammad-Rafiee , Mohammad Khorrami , Azam Gholami

The slime mould Physarum polycephalum has emerged as a model for self-organisation and coordination of contractile activity at large spatial scales. This self-organisation largely results from cytoplasmic flows generated by propagating…

Soft Condensed Matter · Physics 2025-09-23 Raphael Saiseau , Valentin Busson , Marc Durand

Self-organization is the generation of order out of local interactions in non-equilibrium [1]. It is deeply connected to all fields of science from physics, chemistry to biology where functional living structures self-assemble[2] and…

Soft Condensed Matter · Physics 2018-10-24 Utsab Khadka , Viktor Holubec , Haw Yang , Frank Cichos

The process of polarization determines the head and tail of single cells. A mechanism of this kind frequently precedes the subsequent cell locomotion and it determines the direction of motion. The process of polarization has frequently been…

Biological Physics · Physics 2021-12-30 Eduardo Moreno , Sergio Alonso

Aim. To study the dynamics of auto-oscillations arising at the level of enzyme-substrate interaction in a cell and to find the conditions for the self-organization and the formation of chaos in the metabolic process. Methods. A mathematical…

Adaptation and Self-Organizing Systems · Physics 2018-03-15 V. I. Grytsay , I. V. Musatenko

Self-organization in an unmagnetized collisionless plasma (in this paper) refers to formation of transient coherent structures such as collective oscillations (electrostatic waves) or magnetic fields resulting from so-called kinetic effects…

Plasma Physics · Physics 2023-11-29 Chaojie Zhang , Chen-Kang Huang , Chan Joshi

We provide evidence that plastic depinning falls into the same class of phenomena as the random organization which was recently studied in periodically driven particle systems [L. Corte et al., Nature Phys. 4, 420 (2008)]. In the plastic…

Statistical Mechanics · Physics 2015-05-13 C. Reichhardt , C. J. Olson Reichhardt

Flocking behavior is observed in biological systems from the cellular to super-organismal length scales, and the mechanisms and purposes of this behavior are objects of intense interest. In this paper, we study the collective dynamics of…

We propose a two-dimensional model for the organization of stabilized microtubules driven by molecular motors in an unconfined geometry. In this model two kinds of dynamics are competing. The first one is purely diffusive, with an…

Statistical Mechanics · Physics 2019-08-17 B. Bassetti , M. Cosentino Lagomarsino , P. Jona

At the very heart of turbulent fluid flows are many interacting vortices that produce a chaotic and seemingly unpredictable velocity field. Gaining new insight into the complex motion of vortices and how they can lead to topological changes…

Fluid Dynamics · Physics 2022-09-01 Karl Lydon , Sergey V. Nazarenko , Jason Laurie

Collective states of inanimate particles self-assemble through physical interactions and thermal motion. Despite some phenomenological resemblance, including signatures of criticality, the autonomous dynamics that binds motile agents into…

Soft Condensed Matter · Physics 2023-02-01 Xiangzun Wang , Pin-Chuan Chen , Klaus Kroy , Viktor Holubec , Frank Cichos

The organization of cells within tissues plays a vital role in various biological processes, including development and morphogenesis. As a result, understanding how cells self-organize in tissues has been an active area of research. In our…

Soft Condensed Matter · Physics 2023-10-09 Kanaya Malakar , Rafael I. Rubenstein , Dapeng Bi , Bulbul Chakraborty

Mixtures of particles that interact through phoretic effects are known to aggregate if they belong to species that exhibit attractive self-interactions. We study self-organization in a model metabolic cycle composed of three species of…

Soft Condensed Matter · Physics 2023-09-29 Vincent Ouazan-Reboul , Ramin Golestanian , Jaime Agudo-Canalejo

Engineering synthetic materials that mimic the remarkable complexity of living organisms is a fundamental challenge in science and technology. We study the spatiotemporal patterns that emerge when an active nematicfilm of microtubules and…

Vortex coherent structures on arrays of nonlinear oscillators joined by weak links into topologically nontrivial two-dimensional discrete manifolds have been theoretically studied. A circuit of nonlinear electric oscillators coupled by…

Pattern Formation and Solitons · Physics 2020-07-01 Victor P. Ruban