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The rules that specify how the information contained in DNA codes amino acids, is called "the genetic code". Using a simplified version of the Penna nodel, we are using computer simulations to investigate the importance of the genetic code…

Genomics · Quantitative Biology 2009-11-10 E. Gultepe , M. L. Kurnaz

A wide survey has been performed, concerning atomic binding energies and ionization energies used by well- known general purpose Monte Carlo codes and a few specialized electromagnetic models for track structure simulation. Validation…

Computational Physics · Physics 2010-12-09 H. Seo , M. G. Pia , L. Quintieri , M. Begalli , P. Saracco , C. H. Kim

Techniques like speckle holography and shearography are rarely applied due to the complexity of instrument setup and lack of automated result analysis, despite their potential. By simulating speckle interferometric outcomes, we seek to…

Optics · Physics 2025-11-25 Jessica Plassmann , Michael Schuth , Georg von Freymann

We report multipronged progress on the stochastic averaging approach to numerical analytic continuation of quantum Monte Carlo data. With the sampled spectrum parametrized with delta-functions in continuous frequency space, a calculation of…

Strongly Correlated Electrons · Physics 2023-01-11 Hui Shao , Anders W. Sandvik

A computer code or simulator is a mathematical representation of a physical system, for example a set of differential equations. Running the code with given values of the vector of inputs, x, leads to an output y(x) or several such outputs.…

Methodology · Statistics 2016-01-25 Derek Bingham , Pritam Ranjan , William Welch

A newly developed method for systematically improving the convergence of path integrals for transition amplitudes, introduced in Phys. Rev. Lett. 94 (2005) 180403, Phys. Rev. B 72 (2005) 064302, Phys. Lett. A 344 (2005) 84, and expectation…

Statistical Mechanics · Physics 2011-08-08 Danica Stojiljkovic , Aleksandar Bogojevic , Antun Balaz

A three-dimensional Monte Carlo code for modelling radiation transport in Type Ia supernovae is described. In addition to tracking Monte Carlo quanta to follow the emission, scattering and deposition of radiative energy, a scheme involving…

Astrophysics · Physics 2008-11-26 S. A. Sim

Many strongly correlated states, such as those arising in the fractional quantum Hall effect and spin liquids, are described by wave functions obtained by dividing particles into multiple clusters, constructing a readily evaluable wave…

Strongly Correlated Electrons · Physics 2025-10-24 Koyena Bose , Steven H. Simon , Ajit C. Balram

Whether it be due to rapid rotation or binary interactions, deviations from spherical symmetry are common in massive stars. These deviations from spherical symmetry are known to cause non-uniform distributions of various parameters across…

Solar and Stellar Astrophysics · Physics 2022-08-03 Michael Abdul-Masih

The use of the Monte Carlo technique in a reliable and inexpensive way without the need for a standard radioactive source in determining the detector efficiency is becoming widespread every passing day. It is important to model the detector…

Instrumentation and Detectors · Physics 2023-01-18 Esra Uyar , Zeynep Aybüke Günekbay

Canonical ensemble Monte Carlo calculations have been carried out on spheres with two different length scales. Radial distribution functions at various temperatures and densities were computed and compared. Preliminary results indicate that…

Statistical Mechanics · Physics 2007-05-23 E. V. R. Chan

We introduce and present results from the COCOA (Cluster simulatiOn Comparison with ObservAtions) code that has been developed to create idealized mock photometric observations using results from numerical simulations of star cluster…

Astrophysics of Galaxies · Physics 2018-01-24 Abbas Askar , Mirek Giersz , Wojciech Pych , Emanuele Dalessandro

The frequentist interpretation of measurement results requires the specification of an ensemble of independent replications of the same experiment. For complex calculations of bias, coverage, significance, etc., this ensemble is often…

Data Analysis, Statistics and Probability · Physics 2014-11-18 Luc Demortier

Context. Solar energetic particles observed in association with coronal mass ejections (CMEs) are produced by the CME-driven shock waves. The acceleration of particles is considered to be due to diffusive shock acceleration (DSA). Aims. We…

Space Physics · Physics 2016-03-30 Alexandr Afanasiev , Markus Battarbee , Rami Vainio

We present TARDIS - an open-source code for rapid spectral modelling of supernovae (SNe). Our goal is to develop a tool that is sufficiently fast to allow exploration of the complex parameter spaces of models for SN ejecta. This can be used…

Solar and Stellar Astrophysics · Physics 2015-06-18 Wolfgang E. Kerzendorf , Stuart A. Sim

Simulations of geosynchrotron radio emission from extensive air showers performed with the Monte Carlo code REAS1 used analytical parameterisations to describe the spatial, temporal, energy and angular particle distributions in air showers.…

Astrophysics · Physics 2007-07-26 T. Huege , R. Ulrich , R. Engel

Interferometers (e.g. ALMA and NOEMA) allow us to obtain the detailed brightness distribution of astronomical sources in 3 dimensions (R.A., Dec., frequency). However, the spatial correlation of the noise makes it difficult to evaluate the…

Instrumentation and Methods for Astrophysics · Physics 2023-02-21 Takafumi Tsukui , Satoru Iguchi , Ikki Mitsuhashi , Kenichi Tadaki

Coded Aperture Imaging (CAI) has been proposed as an alternative collimation technique in nuclear imaging. To maximize spatial resolution small pinholes in the coded aperture mask are required. However, a high-resolution detector is needed…

Medical Physics · Physics 2023-06-16 Tobias Meißner , Werner Nahm , Jürgen Hesser , Nikolas Löw

Adaptive simulated annealing (ASA) is a global optimization algorithm based on an associated proof that the parameter space can be sampled much more efficiently than by using other previous simulated annealing algorithms. The author's ASA…

Mathematical Software · Computer Science 2007-05-23 Lester Ingber

Continuum normalization of echelle spectra is an important data analysis step that is difficult to automate. Polynomial fitting requires a reasonably high order model to follow the steep slope of the blaze function. However, in the presence…

Instrumentation and Methods for Astrophysics · Physics 2019-06-05 Xin Xu , Jessi Cisewski-Kehe , Allen B. Davis , Debra A. Fischer , John M. Brewer