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Complex systems are difficult to study not only because they are nonlinear, multiscale, and often nonstationary, but because their scientifically relevant organization is often invisible at the level of individual components, pairwise…

Physics and Society · Physics 2026-03-30 Mark M. Bailey

We strengthen the case that the new logical perspective afforded by topos theory is suitable to the task of describing the physical world around us. In exploring some of the aspects of construction of a simple quantum-mechanical system in a…

Quantum Physics · Physics 2007-05-23 John D. Fearns

Although it has been notoriously difficult to pin down precisely what it is that makes life so distinctive and remarkable, there is general agreement that its informational aspect is one key property, perhaps the key property. The unique…

Adaptation and Self-Organizing Systems · Physics 2012-12-20 Sara Imari Walker , Paul C. W. Davies

Learning and interpreting the structure of the environment is an innate feature of biological systems, and is integral to guiding flexible behaviours for evolutionary viability. The concept of a cognitive map has emerged as one of the…

Neurons and Cognition · Quantitative Biology 2022-02-04 James C. R. Whittington , David McCaffary , Jacob J. W. Bakermans , Timothy E. J. Behrens

Large Language Models (LLMs) have demonstrated impressive capabilities in structured reasoning and symbolic tasks, with coding emerging as a particularly successful application. This progress has naturally motivated efforts to extend these…

Artificial Intelligence · Computer Science 2026-02-02 Andrea Asperti , Alberto Naibo , Claudio Sacerdoti Coen

Neural-symbolic methods have demonstrated efficiency in enhancing the reasoning abilities of large language models (LLMs). However, existing methods mainly rely on syntactically mapping natural languages to complete formal languages like…

Computation and Language · Computer Science 2024-06-04 Yiming Wang , Zhuosheng Zhang , Pei Zhang , Baosong Yang , Rui Wang

Economists model knowledge use and acquisition as a cause-and-effect calculus associating observations made by a decision-maker about their world with possible underlying causes. Knowledge models are well-established for static contexts,…

Neural and Evolutionary Computing · Computer Science 2024-12-03 Abigail Devereaux , Roger Koppl

We introduce a logic for knowledge representation and reasoning on protein-protein interactions. Modulo a theory, formulas describe protein structures and dynamic changes. They can be composed in order to add or remove static and dynamic…

Logic in Computer Science · Computer Science 2019-09-19 Adrien Husson , Jean Krivine

In this review article, we discuss connections between the physics of disordered systems, phase transitions in inference problems, and computational hardness. We introduce two models representing the behavior of glassy systems, the spiked…

Disordered Systems and Neural Networks · Physics 2022-12-07 David Gamarnik , Cristopher Moore , Lenka Zdeborová

This paper surveys some recent developments towards a dynamic quantum logic and outlines its explicite construction -- some analogies and contrasts with other logics of dynamics are indicated. Abstract: The development of ``(static)…

Logic · Mathematics 2007-05-23 Bob Coecke , David J. Moore , Sonja Smets

Biologists and physicists have a rich tradition of modeling living systems with simple models composed of a few interacting components. Despite the remarkable success of this approach, it remains unclear how to use such finely tuned models…

Biological Physics · Physics 2025-09-05 Ilya Nemenman , Pankaj Mehta

These notes are a short introduction to the mathematical theory of open quantum systems. They are meant to serve as an entry point into a broad research area which has applications across the quantum sciences dealing with systems subjected…

Quantum Physics · Physics 2026-03-13 Marco Merkli , Ángel Neira

Statistical learning and logical reasoning are two major fields of AI expected to be unified for human-like machine intelligence. Most existing work considers how to combine existing logical and statistical systems. However, there is no…

Artificial Intelligence · Computer Science 2026-02-24 Hiroyuki Kido

Turing patterns are a cornerstone of biological self-organization, yet their emergence typically requires finely tuned parameters occupying narrow regions of high-dimensional space. This poses a fundamental challenge: how can evolving…

Cell Behavior · Quantitative Biology 2026-05-18 Seyoon Kim , Antonio Matas-Gil , Robert G. Endres

We present a contextualist statistical realistic model for quantum-like representations in physics, cognitive science and psychology. We apply this model to describe cognitive experiments to check quantum-like structures of mental…

Quantum Physics · Physics 2010-12-07 Andrei Khrennikov

Computational thinking is a way of reasoning about the world in terms of data. This mindset channels number crunching toward an ambition to discover knowledge through logic, models and simulations. Here we show how computational cognitive…

Physics and Society · Physics 2020-07-21 Massimo Stella , Anastasiya Kapuza , Catherine Cramer , Stephen Uzzo

AlphaGeometry represents a milestone in neuro-symbolic reasoning, yet its architecture faces a log-linear scaling bottleneck within its symbolic deduction engine that limits its efficiency as problem complexity increases. Recent technical…

Artificial Intelligence · Computer Science 2026-04-21 Anthony Bordg

This work builds upon a well-established research tradition on modal logics of awareness. One of its aims is to export tools and techniques to other areas within modal logic. To this end, we illustrate a number of significant bridges with…

Logic in Computer Science · Computer Science 2023-07-12 Carlo Proietti , Fernando R. Velázquez-Quesada , Antonio Yuste-Ginel

This paper considers neural representation through the lens of active inference, a normative framework for understanding brain function. It delves into how living organisms employ generative models to minimize the discrepancy between…

Neurons and Cognition · Quantitative Biology 2023-10-24 Giovanni Pezzulo , Leo D'Amato , Francesco Mannella , Matteo Priorelli , Toon Van de Maele , Ivilin Peev Stoianov , Karl Friston

Often fairness assumptions need to be made in order to establish liveness properties of distributed systems, but in many situations they lead to false conclusions. This document presents a research agenda aiming at laying the foundations of…

Logic in Computer Science · Computer Science 2019-12-13 Rob van Glabbeek