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The concept of dynamical compensation has been recently introduced to describe the ability of a biological system to keep its output dynamics unchanged in the face of varying parameters. Here we show that, according to its original…

Quantitative Methods · Quantitative Biology 2018-02-07 Alejandro F. Villaverde , Julio R. Banga

All biological systems are subject to perturbations: due to thermal fluctuations, external environments, or mutations. Yet, while biological systems are composed of thousands of interacting components, recent high-throughput experiments…

Quantitative Methods · Quantitative Biology 2024-12-19 Christopher Joel Russo , Kabir Husain , Arvind Murugan

Multi-system interaction is an important and difficult problem in physics. Motivated by the experimental result of an electronic circuit element "Fractor", we introduce the concept of dynamic-order fractional dynamic system, in which the…

Mathematical Physics · Physics 2013-04-10 HongGuang Sun , Hu Sheng , YangQuan Chen , Wen Chen , ZhongBo Yu

This paper develops a conceptual extension of the Kinetic Theory of Active Particles, building upon the framework introduced in [2]. Living systems cannot be adequately described within classical single-scale paradigms, even when refined.…

Dynamical Systems · Mathematics 2026-04-22 Diletta Burini , Damian A. Knopoff

Dynamical systems theory has long provided a foundation for understanding evolving phenomena across scientific domains. Yet, the application of this theory to complex real-world systems remains challenging due to issues in mathematical…

Machine Learning · Computer Science 2024-11-05 Samuel A. Moore , Brian P. Mann , Boyuan Chen

We introduce the mean Assouad dimension of a dynamical system, motivated by the Assouad dimension in fractal geometry. Using dimension interpolation, we further define the mean Assouad spectrum. This provides a new family of bi-Lipschitz…

Dynamical Systems · Mathematics 2026-01-05 Qiang Huo , Adam Śpiewak

The rapidly changing landscapes of modern optimization problems require algorithms that can be adapted in real-time. This paper introduces an Adaptive Metaheuristic Framework (AMF) designed for dynamic environments. It is capable of…

Artificial Intelligence · Computer Science 2024-04-19 Bestoun S. Ahmed

In-context system identification aims at constructing meta-models to describe classes of systems, differently from traditional approaches that model single systems. This paradigm facilitates the leveraging of knowledge acquired from…

Machine Learning · Computer Science 2023-12-08 Dario Piga , Filippo Pura , Marco Forgione

We introduce Neural Dynamical Systems (NDS), a method of learning dynamical models in various gray-box settings which incorporates prior knowledge in the form of systems of ordinary differential equations. NDS uses neural networks to…

This article reports about a novel extension of dissipative particle dynamics (DPD) that allows the study of the collective dynamics of complex chemical and structural systems in a spatially resolved manner with a combinatorially complex…

Subcellular Processes · Quantitative Biology 2011-12-07 Rudolf M. Fuechslin , Thomas Maeke , John S. McCaskill

The system decomposition theory has recently been developed for the dynamic analysis of nonlinear compartmental systems. The application of this theory to the ecosystem analysis has also been introduced in a separate article. Based on this…

Systems and Control · Computer Science 2020-11-24 Huseyin Coskun

We study classical stochastic systems with discrete states, coupled to switching external environments. For fast environmental processes we derive reduced dynamics for the system itself, focusing on corrections to the adiabatic limit of…

Statistical Mechanics · Physics 2019-03-27 Peter G. Hufton , Yen Ting Lin , Tobias Galla

In this paper, the dynamical system analysis has been performed to analyze the dynamical behavior of the Universe in $f(R,L_m,T)$ gravity with a scalar field. A well motivated potential function and the linear form of the functional…

General Relativity and Quantum Cosmology · Physics 2026-04-21 R. R. Panchal , Divya G. Sanjava , A. H. Hasmani , B. Mishra

Complex change is often described as "evolutionary" in economics, policy, and technology, yet most system dynamics models remain constrained to fixed state spaces and equilibrium-seeking behavior. This paper argues that evolutionary…

Populations and Evolution · Quantitative Biology 2026-02-19 Dan Adler

In data-driven modelling of complex dynamic processes, it is often desirable to combine different classes of models to enhance performance. Examples include coupled models of different fidelities, or hybrid models based on physical…

Dynamical Systems · Mathematics 2024-12-10 Shiqi Wu , Ludovic Chamoin , Qianxiao Li

We analyse the stability of linear dynamical systems defined on sparse, random graphs with predator-prey, competitive, and mutualistic interactions. These systems are aimed at modelling the stability of fixed points in large systems defined…

Statistical Mechanics · Physics 2025-01-30 Andrea Marcello Mambuca , Chiara Cammarota , Izaak Neri

Almost every biological, economic and social system is a complex adaptive system (CAS). Mathematical and computer models are relevant to CAS. Some approaches to modeling CAS are given. Applications in vaccination and the immune system are…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 E. Ahmed , A. S. Elgazzar , A. S. Hegazi

We consider a spatially distributed population dynamics model with excitable predator-prey dynamics, where species propagate in space due to their taxis with respect to each other's gradient in addition to, or instead of, their diffusive…

Pattern Formation and Solitons · Physics 2009-11-10 V. N. Biktashev , J. Brindley , A. V. Holden , M. A. Tsyganov

Various biological system models have been proposed in systems biology, which are based on the complex biological reactions kinetic of various components. These models are not practical because we lack of kinetic information. In this paper,…

Quantitative Methods · Quantitative Biology 2011-02-19 Weidong Huang , Chundu Wu , Bingjia Xiao , Weidong Xia

Modeling and predicting the dynamics of complex multiscale systems remains a significant challenge due to their inherent nonlinearities and sensitivity to initial conditions, as well as limitations of traditional machine learning methods…

Machine Learning · Computer Science 2025-10-23 Elias Al Ghazal , Jad Mounayer , Beatriz Moya , Sebastian Rodriguez , Chady Ghnatios , Francisco Chinesta
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