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At odds with a traditional view of molecular evolution that seeks a descent-with-modification relationship between functional sequences, new functions can emerge {\it de novo} with relative ease. At early times of molecular evolution,…

Populations and Evolution · Quantitative Biology 2021-05-26 Susanna Manrubia

Numerous definitions for complexity have been proposed over the last half century, with little consensus achieved on how to use the term. A definition of complexity is supplied here that is closely related to the Kolmogorov Complexity and…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Russell K. Standish

This introductory paper is structured in the form of an "interview", where the author answers the following questions: Why did you begin working with complex systems? How would you define complexity? What is your favourite aspect/concept of…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Francis Heylighen

In this work, we propose a testing procedure to distinguish between the different approaches for computing complexity. Our test does not require a direct comparison between the approaches and thus avoids the issue of choice of gates, basis,…

High Energy Physics - Theory · Physics 2019-04-15 Tibra Ali , Arpan Bhattacharyya , S. Shajidul Haque , Eugene H. Kim , Nathan Moynihan

Can we quantify the change of complexity throughout evolutionary processes? We attempt to address this question through an empirical approach. In very general terms, we simulate two simple organisms on a computer that compete over limited…

Neural and Evolutionary Computing · Computer Science 2016-01-05 Alyssa Adams , Hector Zenil , Eduardo Hermo Reyes , Joost Joosten

Evolution by natural selection, which is one of the most compelling themes of modern science, brought forth evolutionary algorithms and evolutionary computation, applying mechanisms of evolution in nature to various problems solved by…

Neural and Evolutionary Computing · Computer Science 2025-08-27 Eugene Eberbach

In these notes we review emergent phenomena in complex systems, emphasizing ways to identify potential underlying universal mechanisms that generates complexity. The discussion is centered around the emergence of collective behavior in…

Disordered Systems and Neural Networks · Physics 2008-04-02 Dante R. Chialvo

Bedau has developed a general set of evolutionary statistics that quantify the adaptive component of evolutionary processes. On the basis of these measures, he has proposed a set of 4 classes of evolutionary system. All artificial life…

Adaptation and Self-Organizing Systems · Physics 2009-09-29 Russell K. Standish

How multicellular life forms evolved out from unicellular ones constitutes a major problem in our understanding of the evolution of our biosphere. A recent set of experiments involving yeast cell populations has shown that selection for…

Populations and Evolution · Quantitative Biology 2015-11-10 Salva Duran-Nebreda , Ricard V. Solé

Contemporary complexity theory has been instrumental in providing novel rigorous definitions for some classic philosophical concepts, including emergence. In an attempt to provide an account of emergence that is consistent with complexity…

Adaptation and Self-Organizing Systems · Physics 2015-02-06 Jonathan Lawhead

Societal complexity may be at a historical peak. Distinct from entropy, complexity tends to rise as systems move away from order, crest at an intermediate state, and decline as entropy continues increasing. The use of a thermodynamic…

Physics and Society · Physics 2026-05-08 Theodore Modis

This paper attempts to make feasible the evolutionary emergence of novelty in a supposedly deterministic world which behavior is associated with those of the mathematical dynamical systems. The work was motivated by the observation of…

Adaptation and Self-Organizing Systems · Physics 2024-06-26 R. Herrero , F. Pi , J. Rius , G. Orriols

Recent advances in Artificial Intelligence (AI) have revived the quest for agents able to acquire an open-ended repertoire of skills. However, although this ability is fundamentally related to the characteristics of human intelligence,…

Artificial Intelligence · Computer Science 2020-12-18 Eleni Nisioti , Clément Moulin-Frier

The dynamic instability of the living systems and the "superposition" of different forms of randomness are viewed as a component of the contingently increasing organization of life along evolution. We briefly survey how classical and…

Other Quantitative Biology · Quantitative Biology 2011-04-07 Marcello Buiatti , Giuseppe Longo

Continuing generation of novelty, complexity, and adaptation are well-established as core aspects of open-ended evolution. However, it has yet to be firmly established to what extent these phenomena are coupled and by what means they…

Neural and Evolutionary Computing · Computer Science 2025-09-05 Matthew Andres Moreno , Santiago Rodriguez Papa , Charles Ofria

Basic problems in complex systems are surveyed in connection with Life. As a key issue for complex systems, complementarity between syntax/rule/parts and semantics/behavior/whole is stressed. To address the issue, a constructive approach…

adap-org · Physics 2007-05-23 Kunihiko Kaneko

The goal of Artificial Life research, as articulated by Chris Langton, is "to contribute to theoretical biology by locating life-as-we-know-it within the larger picture of life-as-it-could-be" (1989, p.1). The study and pursuit of…

Artificial Intelligence · Computer Science 2022-09-20 James M. Borg , Andrew Buskell , Rohan Kapitany , Simon T. Powers , Eva Reindl , Claudio Tennie

I describe my path to unconventionality in my exploration of theoretical and applied aspects of computation towards revealing the algorithmic and reprogrammable properties and capabilities of the world, in particular related to applications…

General Literature · Computer Science 2017-06-28 Hector Zenil

Enzymes are on the front lines of evolution. All living organisms rely on highly efficient, specific enzymes for growth, sustenance, and reproduction; and many diseases are a consequence of a mutation on an enzyme that affects its catalytic…

Molecular Networks · Quantitative Biology 2009-01-07 Nilou Ataie

Recent years have witnessed the detection of an increasing number of complex organic molecules in interstellar space, some of them being of prebiotic interest. Disentangling the origin of interstellar prebiotic chemistry and its connection…

Astrophysics of Galaxies · Physics 2022-07-29 Miguel Garcia-Sanchez , Izaskun Jimenez-Serra , Fernando Puente-Sanchez , Jacobo Aguirre
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