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Graphs are naturally sparse objects that are used to study many problems involving networks, for example, distributed learning and graph signal processing. In some cases, the graph is not given, but must be learned from the problem and…

Machine Learning · Statistics 2017-08-31 Martin Sundin , Arun Venkitaraman , Magnus Jansson , Saikat Chatterjee

Bayesian networks are basic graphical models, used widely both in statistics and artificial intelligence. These statistical models of conditional independence structure are described by acyclic directed graphs whose nodes correspond to…

Optimization and Control · Mathematics 2010-12-01 Raymond Hemmecke , Silvia Lindner , Milan Studený

A wide range of networks, including small-world topology, can be modelled by the connectivity $\gamma$, and randomness $\omega$ of the links. Both learning and attractor abilities of a neural network can be measured by the mutual…

Disordered Systems and Neural Networks · Physics 2007-05-23 D. Dominguez , K. Koroutchev , E. Serrano , F. B. Rodriguez

Learning a task induces connectivity changes in neural circuits, thereby changing their dynamics. To elucidate task related neural dynamics we study trained Recurrent Neural Networks. We develop a Mean Field Theory for Reservoir Computing…

Neurons and Cognition · Quantitative Biology 2017-06-28 Alexander Rivkind , Omri Barak

The random map model is a deterministic dynamical system in a finite phase space with n points. The map that establishes the dynamics of the system is constructed by randomly choosing, for every point, another one as being its image. We…

Biological Physics · Physics 2009-11-07 David Romero , Federico Zertuche

Evolutionary games on graphs play an important role in the study of evolution of cooperation in applied biology. Using rigorous mathematical concepts from a dynamical systems and graph theoretical point of view, we formalize the notions of…

Dynamical Systems · Mathematics 2014-11-18 Jeremias Epperlein , Stefan Siegmund , Petr Stehlík

Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. We here derive an expression for the number of attractors in…

Molecular Networks · Quantitative Biology 2007-05-23 Björn Samuelsson , Carl Troein

Graphs arise naturally in many real-world applications including social networks, recommender systems, ontologies, biology, and computational finance. Traditionally, machine learning models for graphs have been mostly designed for static…

Machine Learning · Computer Science 2020-04-28 Seyed Mehran Kazemi , Rishab Goel , Kshitij Jain , Ivan Kobyzev , Akshay Sethi , Peter Forsyth , Pascal Poupart

We consider the problem of learning a graph from a finite set of noisy graph signal observations, the goal of which is to find a smooth representation of the graph signal. Such a problem is motivated by the desire to infer relational…

Machine Learning · Computer Science 2023-02-08 Xiaolu Wang , Yuen-Man Pun , Anthony Man-Cho So

In this review, we describe the singular success of attractor neural network models in describing how the brain maintains persistent activity states for working memory, error-corrects, and integrates noisy cues. We consider the mechanisms…

Neurons and Cognition · Quantitative Biology 2022-03-03 Mikail Khona , Ila R. Fiete

Recurrent Neural Networks excel at predicting and generating complex high-dimensional temporal patterns. Due to their inherent nonlinear dynamics and memory, they can learn unbounded temporal dependencies from data. In a Machine Learning…

Machine Learning · Computer Science 2024-05-14 Guillaume Pourcel , Mirko Goldmann , Ingo Fischer , Miguel C. Soriano

Learning a graph topology to reveal the underlying relationship between data entities plays an important role in various machine learning and data analysis tasks. Under the assumption that structured data vary smoothly over a graph, the…

Machine Learning · Statistics 2023-08-23 Xingyue Pu , Tianyue Cao , Xiaoyun Zhang , Xiaowen Dong , Siheng Chen

We consider the population dynamics of a set of species whose network of catalytic interactions is described by a directed graph. The relationship between the attractors of this dynamics and the underlying graph theoretic structures like…

adap-org · Physics 2009-10-30 Sanjay Jain , Sandeep Krishna

Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful…

Machine Learning · Computer Science 2018-03-12 Yujia Li , Oriol Vinyals , Chris Dyer , Razvan Pascanu , Peter Battaglia

Graphs provide a natural representation of relational structure that arises across diverse domains. Despite this ubiquity, graph structure is typically learned in a modality- and task-isolated manner, where graph representations are…

Machine Learning · Computer Science 2026-05-27 Ziming Li , Xiaoming Wu , Zehong Wang , Jiazheng Li , Yijun Tian , Jinhe Bi , Yunpu Ma , Yanfang Ye , Chuxu Zhang

We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…

Physics and Society · Physics 2026-02-20 Tiago P. Peixoto , Leto Peel , Thilo Gross , Manlio De Domenico

Data with geometric structure is ubiquitous in machine learning often arising from fundamental symmetries in a domain, such as permutation-invariance in graphs and translation-invariance in images. Group-convolutional architectures, which…

Machine Learning · Computer Science 2024-10-10 Bobak T. Kiani , Lukas Fesser , Melanie Weber

Neuromorphic chips embody computational principles operating in the nervous system, into microelectronic devices. In this domain it is important to identify computational primitives that theory and experiments suggest as generic and…

Neural and Evolutionary Computing · Computer Science 2015-06-18 Massimiliano Giulioni , Federico Corradi , Vittorio Dante , Paolo del Giudice

Navigation is crucial for animal behavior and is assumed to require an internal representation of the external environment, termed a cognitive map. The precise form of this representation is often considered to be a metric representation of…

Neurons and Cognition · Quantitative Biology 2020-02-10 Tie Xu , Omri Barak

Graph Transformers, which incorporate self-attention and positional encoding, have recently emerged as a powerful architecture for various graph learning tasks. Despite their impressive performance, the complex non-convex interactions…

Machine Learning · Computer Science 2024-06-05 Hongkang Li , Meng Wang , Tengfei Ma , Sijia Liu , Zaixi Zhang , Pin-Yu Chen