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A packed community of exponentially proliferating microbes will spread in size exponentially. However, due to nutrient depletion, mechanical constraints, or other limitations, exponential proliferation is not indefinite, and the spreading…

Biological Physics · Physics 2026-02-02 Meiyi Yao , Joshua M. Jones , Joseph W. Larkin , Andrew Mugler

A non-Markovian stochastic predator-prey model is introduced in which the prey are immobile plants and predators are diffusing herbivors. The model is studied by both mean-field approximation (MFA)and computer simulations. The MFA results a…

Disordered Systems and Neural Networks · Physics 2009-10-31 Rouzbeh Gerami , Mohammad R. Ejtehadi

We introduce a ``spatial'' Lyapunov exponent to characterize the complex behavior of non chaotic but convectively unstable flow systems. This complexity is of spatial type and is due to sensitivity to the boundary conditions. We show that…

chao-dyn · Physics 2009-10-31 M. Falcioni , D. Vergni , A. Vulpiani

Strong nonlinear effects combined with diffusive coupling may give rise to unpredictable evolution in spatially extended deterministic dynamical systems even in the presence of a fully negative spectrum of Lyapunov exponents. This regime,…

Chaotic Dynamics · Physics 2009-11-07 F. Ginelli , R. Livi , A. Politi

We study a spatial predator-prey model in which prey can enter a protection zone (refuge) inaccessible to predators, while predators exhibit directed movement toward prey-rich regions. The directed movement is modeled by a far-sighted…

Analysis of PDEs · Mathematics 2026-01-23 Kousuke Kuto , Kazuhiro Oeda

In evolutionary dynamics, well-mixed populations are almost always associated with all-to-all interactions; mathematical models are based on complete graphs. In most cases, these models do not predict fixation probabilities in groups of…

Populations and Evolution · Quantitative Biology 2024-02-28 Francisco Herrerías-Azcué , Vicente Pérez-Muñuzuri , Tobias Galla

Populations experience a complex interplay of continuous and discrete processes: continuous growth and interactions are punctuated by discrete reproduction events, dispersal, and external disturbances. These dynamics can be modeled by…

Populations and Evolution · Quantitative Biology 2025-09-03 Sebastian J. Schreiber

The biological requirements for an ecosystem to develop and maintain species diversity are in general unknown. Here we consider a model ecosystem of sessile and mutually excluding organisms competing for space [Mathiesen et al. Phys. Rev.…

Populations and Evolution · Quantitative Biology 2012-09-10 Namiko Mitarai , Joachim Mathiesen , Kim Sneppen

We simulate an individual-based model that represents both the phenotype and genome of digital organisms with predator-prey interactions. We show how open-ended growth of complexity arises from the invariance of genetic evolution operators…

Populations and Evolution · Quantitative Biology 2009-11-13 Nicholas Guttenberg , Nigel Goldenfeld

We study the Tangled Nature model of macro evolution and demonstrate that the co-evolutionary dynamics produces an increasingly correlated core of well occupied types. At the same time the entire configuration of types becomes increasing…

Statistical Mechanics · Physics 2015-03-13 Dominic Jones , Henrik Jeldtoft Jensen , Paolo Sibani

Some dynamical properties present in a problem concerning the acceleration of particles in a wave packet are studied. The dynamics of the model is described in terms of a two-dimensional area preserving map. We show that the phase space is…

Chaotic Dynamics · Physics 2011-09-14 Diego F. M. Oliveira , Marko Robnik , Edson D. Leonel

A great number of biological organisms live in aqueous environments. Major evolutionary transitions, including the emergence of life itself, likely occurred in such environments. While the chemical aspects of the role of water in biology…

Populations and Evolution · Quantitative Biology 2020-07-01 Madison S. Krieger , Sam Sinai , Martin A. Nowak

The dynamics and the steady states of a point-like tracer particle immersed in a confined critical fluid are studied. The fluid is modeled field-theoretically in terms of an order parameter (concentration or density field) obeying…

Statistical Mechanics · Physics 2023-01-03 Markus Gross

In this paper we study the dynamics of stochastic microorganism flocculation models. Given the strong influence of environmental and seasonal fluctuations that are present in these models, we propose a stochastic model that includes…

Probability · Mathematics 2025-11-18 Alexandru Hening , Nguyen T. Hieu , Dang H. Nguyen , Nhu Nguyen

Microbial populations generally evolve in volatile environments, under conditions fluctuating between harsh and mild, e.g. as the result of sudden changes in toxin concentration or nutrient abundance. Environmental variability thus shapes…

Populations and Evolution · Quantitative Biology 2023-12-07 Matthew Asker , Lluís Hernández-Navarro , Alastair M. Rucklidge , Mauro Mobilia

The evolution of two species with different fitness is investigated on degree-heterogeneous graphs. The population evolves either by one individual dying and being replaced by the offspring of a random neighbor (voter model (VM) dynamics)…

Populations and Evolution · Quantitative Biology 2009-11-13 T. Antal , S. Redner , V. Sood

We consider a thermodynamically consistent model for the evolution of thermally conducting two-phase incompressible fluids. Complementing previous results, we prove additional regularity properties of solutions in the case when the…

Analysis of PDEs · Mathematics 2017-08-04 Michela Eleuteri , Stefania Gatti , Giulio Schimperna

Active fluids exhibit spontaneous flows with complex spatiotemporal structure, which have been observed in bacterial suspensions, sperm cells, cytoskeletal suspensions, self-propelled colloids, and cell tissues. Despite occurring in the…

Soft Condensed Matter · Physics 2022-10-05 Ricard Alert , Jaume Casademunt , Jean-François Joanny

We consider a spatially distributed population dynamics model with excitable predator-prey dynamics, where species propagate in space due to their taxis with respect to each other's gradient in addition to, or instead of, their diffusive…

Pattern Formation and Solitons · Physics 2009-11-10 V. N. Biktashev , J. Brindley , A. V. Holden , M. A. Tsyganov

We concentrate on kinetic models for swarming with individuals interacting through self-propelling and friction forces, alignment and noise. We assume that the velocity of each individual relaxes to the mean velocity. In our present case,…

Analysis of PDEs · Mathematics 2019-12-03 Mihaï Bostan , José Antonio Carrillo