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We present a hybrid method for the simulation of colloidal systems, that combines molecular dynamics (MD) with the Lattice-Boltzmann (LB) scheme. The LB method is used as a model for the solvent in order to take into account the…
The interplay between structure and dynamics in non-equilibrium steady-state is far from understood. We address this interplay by tracking Brownian Dynamics trajectories of particles in a binary colloid of opposite charges in an external…
The non-equilibrium structural and dynamical properties of flexible polymers confined in a square microchannel and exposed to a Poiseuille flow are investigated by mesoscale simulations. The chain length and the flow strength are…
We consider a class of nonconvex energy functionals that lies in the framework of the peridynamics model of continuum mechanics. The energy densities are functions of a nonlocal strain that describes deformation based on pairwise…
The mathematical formulation of the model for molecular movement of single motor proteins driven by cyclic biochemical reactions in an aqueous environment leads to a drifted Brownian motion characterized by coupled diffusion equations. In…
An elastic rod model for semi-flexible polymers is presented. Theory for a continuum rod is reviewed, and it is shown that a popular discretised model used in numerical simulations gives the correct continuum limit. Correlation functions…
The kinetic theory is formulated with respect to anholonomic frames of reference on curved spacetimes. By using the concept of nonlinear connection we develop an approach to modelling locally anisotropic kinetic processes and, in…
The theory of transport phenomena in multicomponent electrolyte solutions is presented here through the integration of continuum mechanics, electromagnetism, and non-equilibrium thermodynamics. The governing equations of irreversible…
We investigate the electromagnetic dynamics of spin-nondegenerate classical particle models arising from Lorentz-violating sectors of the Standard-Model Extension, focusing on the $b_\mu$ background. Starting from the type-2 relativistic…
One of the most straightforward ways to study thermal properties beyond linear response is to monitor the relaxation of an arbitrarily large left-right temperature gradient $T_L-T_R$. In one-dimensional systems which support ballistic…
Recently I proposed a new calculation scheme of a partition function of an immersion object using path integral method and theory of soliton (to appear in J.Phys.A). I applied the scheme to problem of elastica in two-dimensional space and…
A nonlinear viscoelastic theory of nematodynamic type is developed for nematic liquid crystalline (LC) semi-flexible polymers. A measure of transient elastic strain due to the change in length of macromolecular strands under stress, and the…
Mechanical properties of nucleic acids play an important role in many biological processes which often involve physical deformations of these molecules. At sufficiently long length scales (say above $\sim 20-30$ base pairs) the mechanics of…
The problems of high linear conductivity in an electric field, as well as nonlinear conductivity, are considered for plasma-like systems. First, we recall several observations of nonlinear fast charge transport in dusty plasma, molecular…
We analyze the nonequilibrium dynamics of single inextensible semiflexible biopolymers as stretching forces are applied at the ends. Based on different (contradicting) heuristic arguments, various scaling laws have been proposed for the…
The Boltzmann type kinetic equation for solitons in Nonlinear Schr\"{o}dinger equation has been constructed on the base of analysis of two soliton collision. Possible applications for Langmuir solitons in plasma and solitons in optic fiber…
We describe the large-scale collective behavior of solutions of polar biofilaments and both stationary and mobile crosslinkers. Both mobile and stationary crosslinkers induce filament alignment promoting either polar or nematic order. In…
In this Letter, we clarify the physical origin of effective transport in periodic and tilted periodic systems. When Brownian dynamics is examined on the scale of a single period, the particle displacement admits a natural separation into a…
Bidirectional variants of stochastic many particle models for transport by molecular motors show a strong tendency to form macroscopic clusters on static lattices. Inspired by the fact that the microscopic tracks for molecular motors are…
The polymer systems are discussed in the framework of the Landau-Ginzburg model. The model is derived from the mesoscopic Edwards hamiltonian via the conditional partition function. We discuss flexible, semiflexible and rigid polymers. The…