Related papers: Discrete kink dynamics in hydrogen-bonded chains I…
We study static properties and the dynamical structure factor of zero-temperature dilute bosons interacting via a soft-shoulder potential in one dimension. Our approach is fully microscopic and employs state-of-the-art quantum Monte Carlo…
Motivated by recent simulations and by experiments on aggregation of gliding bacteria, we study a model of the collective dynamics of self-propelled hard rods on a substrate in two dimensions. The rods have finite size, interact via…
We study various properties of topological solitons (kinks) of a field-theoretic model with a polynomial potential of the twelfth degree. This model is remarkable in that it has several topological sectors, in which kinks have different…
We study the propagation of very large amplitude localized excitations in a model of DNA that takes explicitly into account the helicoidal structure. These excitations represent the ``transcription bubble'', where the hydrogen bonds between…
The weakly nonlinear regime of a viscoelastic Navier--Stokes fluid is investigated. For the purely hydrodynamic case, it is known that large-scale perturbations tend to the minima of a Ginzburg-Landau free-energy functional with a…
We consider a Klein-Gordon chain that is periodically driven at one end and has dissipation at one or both boundaries. An interesting numerical observation in a recent study~[arXiv:2209.03977] was that for driving frequency in the phonon…
Hydrogen bonds play a pivotal role in chemistry, biology, and condensed-matter physics, where quantum tunnelling can strongly influence structure and dynamics. Isotope substitution (H $\rightarrow$ D) provides a sensitive probe of such…
We study the classical thermodynamics of the double sinh-Gordon (DSHG) theory in 1+1 dimensions. This model theory has a double well potential, thus allowing for the existence of kinks and antikinks. Though it is nonintegrable, the DSHG…
We propose a dynamical model depicting the interactions between DNA and a specific binding protein involving long range transmissions. The dynamics rely on the coupling between Hydrogen bonds formed between DNA and protein and between the…
For a one-dimensional linear lattice, earlier work has shown how to systematically construct a slowly-decaying linear potential bearing a localized eigenmode embedded in the continuous spectrum. Here, we extend this idea in two directions:…
We address the issue of internal modes of a kink of a discrete sine-Gordon equation. The main point of the present study is to elucidate how the antisymmetric internal mode frequency dependence enters the quasicontinuum spectrum of…
We develop a general mapping from given kink or pulse shaped travelling-wave solutions including their velocity to the equations of motion on one-dimensional lattices which support these solutions. We apply this mapping - by definition an…
It has been observed that certain classical chains admit topologically protected zero-energy modes that are localized on the boundaries. The static features of such localized modes are captured by linearized equations of motion, but the…
Molecular dynamics simulations are used to investigate the atomic mobility and diffusivity of a generalized Frenkel-Kontorova model which takes into account anharmonic (exponential) interaction of atoms subjected to a three-dimensional…
By using Lanczos exact diagonalization and quantum Monte Carlo combined with stochastic analytic continuation, we study the dynamical properties of the $S=1$ antiferromagnetic Heisenberg chain with different strengths of bond disorder. In…
The behavior of the kink in the sine-Gordon (sG) model in the presence of periodic inhomogeneity is studied. An ansatz is proposed that allows for the construction of a reliable effective model with two degrees of freedom. Effective models…
We study the electronic and dynamic properties of a one-dimensional Thue-Morse chain within the framework of the transfer model. By means of direct diagonalization of the Hamiltonian matrix we first show that the trace map of the transfer…
We investigate a mechanical system consisting of infinite number of harmonically coupled pendulums which can impact on two rigid rods. Because of gravitational force the system has two degenerate ground states. The related topological kink…
In the present work we explore the competition of quadratic and quartic dispersion in producing kink-like solitary waves in a model of the nonlinear Schr{\"o}dinger type bearing cubic nonlinearity. We present the first 6 families of…
We study experimentally and theoretically the properties of structural defects (kink solitons) in two-dimensional ion Coulomb crystals. We show how different types of kink solitons with different physical properties can be realized, and…