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We propose a minimal model of the dynamics of diversity -- replicator equations with extinction, invasion and mutation. We numerically study the behavior of this simple model and show that it displays completely different behavior from the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kei Tokita , Ayumu Yasutomi

In an attempt to explain the uniqueness of the coding mechanism of living cells as contrasted with multi-species structure of ecosystems we examine two models of individuals with some replicative properties. In the first model the system…

Statistical Mechanics · Physics 2009-10-31 A. Lipowski

In physics, I noticed subjects not explained by formulas were often not studied, like how uncontrolled growth systems changed form. Weather, businesses, societies, environments, communities, cultures, groups, relationships, lives, and…

Physics and Society · Physics 2023-05-18 Jessie Henshaw

The origin of life is shrouded in mystery, with few surviving clues, obscured by evolutionary competition. Previous reviews have touched on the complementary approaches of top-down and bottom-up synthetic biology to augment our…

Populations and Evolution · Quantitative Biology 2022-07-18 Ivan Ivanov , Stoyan K. Smoukov , Ehsan Nourafkan , Katharina Landfester , Petra Schwille

Within a mathematical model, the process of interaction of the metabolic processes such as glycolysis and gluconeogenesis is studied. As a result of the running of two opposite processes in a cell, the conditions for their interaction and…

Other Quantitative Biology · Quantitative Biology 2017-07-19 V. I. Grytsay

The problem of unicellular-multicellular transition is one of the main issues that is discussing in evolutionary biology. In [1] the fitness of a colony of cells is considered in terms of its two basic components, viability and fecundity.…

Populations and Evolution · Quantitative Biology 2015-06-08 Fuad Aleskerov , Denis Tverskoy

An extension of coupled maps is given which allows for the growth of the number of elements, and is inspired by the cell differentiation problem. The growth of elements is made possible first by clustering the phases, and then by…

adap-org · Physics 2009-10-28 Kunihiko Kaneko

Recent years have witnessed the detection of an increasing number of complex organic molecules in interstellar space, some of them being of prebiotic interest. Disentangling the origin of interstellar prebiotic chemistry and its connection…

Astrophysics of Galaxies · Physics 2022-07-29 Miguel Garcia-Sanchez , Izaskun Jimenez-Serra , Fernando Puente-Sanchez , Jacobo Aguirre

We discuss a simple model of co-evolution. In order to emphasise the effect of interaction between individuals the entire population is subjected to the same physical environment. Species are emergent structures and extinction, origination…

Statistical Mechanics · Physics 2007-05-23 Kim Christensen , Simone A. di Collobiano , Matt Hall , Henrik J. Jensen

The growth, form, and division of prebiotic vesicles, membraneous bags of fluid of varying components and shapes is hypothesized to have served as the substrate for the origin of life. The dynamics of these out-of-equilibrium structures is…

Soft Condensed Matter · Physics 2019-07-24 Teresa Ruiz-Herrero , Thomas G. Fai , L. Mahadevan

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

Populations and Evolution · Quantitative Biology 2009-11-13 Jun Sun , Michael W. Deem

Living systems are thermodynamically open but closed in their organization. In other words, even though their material components turn over constantly, a material-independent property persists, which we call organization. Moreover,…

Quantitative Methods · Quantitative Biology 2025-03-07 Pedro Márquez-Zacarías , Andrés Ortiz-Muñoz , Emma P. Bingham

Attention is drawn to the possibility that self-organizing biological neural networks could spontaneously acquire the capability to carry out sophisticated computations. In particular it is shown that the effective action governing the…

adap-org · Physics 2008-02-03 George Chapline

The present view of biological phenomena is based on a biochemical paradigm that development of living organisms is defined by information stored in a molecular form as some genetic code. However, new discoveries indicate that biological…

Other Quantitative Biology · Quantitative Biology 2023-11-14 Yuri K. Shestopaloff

Microbes produce metabolic resources that are important for cell growth yet leak across membranes into the extracellular environment. Other microbes in the same environment can use these resources and adjust their own metabolic production…

Populations and Evolution · Quantitative Biology 2018-01-16 Yoav Kallus , John H. Miller , Eric Libby

The goal of this paper is the identification of the physical processes at the origin of the nonlinear behavior of a plasma conductor when an external constraint gradually departs the system from thermal equilibrium. This reveals the…

Pattern Formation and Solitons · Physics 2007-08-31 E. Lozneanu , S. Popescu , M. Sanduloviciu

An important feature of many complex systems, both natural and artificial, is the structure and organization of their interaction networks with interesting properties. Here we present a theory of self-organization by evolutionary adaptation…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Venkat Venkatasubramanian , Santhoji Katare , Priyan R. Patkar , Fangping Mu

The possibility that evolutionary forces -- together with a few fundamental factors such as thermodynamic constraints, specific computational features enabling information processing, and ecological processes -- might constrain the logic of…

Biological Physics · Physics 2025-12-30 Manlio De Domenico

This paper is concerned with complex macroscopic behaviour arising in many-body systems through the combinations of competitive interactions and disorder, even with simple ingredients at the microscopic level. It attempts to indicate and…

Disordered Systems and Neural Networks · Physics 2015-05-13 David Sherrington

The dynamics of cellular aggregates is driven by the interplay of mechanochemical processes and cellular activity. Although deterministic models may capture mechanical features, local chemical fluctuations trigger random cell responses,…

Soft Condensed Matter · Physics 2024-01-17 Ana Carpio , Elena Cebrian