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Circle graphs are intersection graphs of chords of a circle. In this paper, we present a new algorithm for the circle graph isomorphism problem running in time $O((n+m)\alpha(n+m))$ where $n$ is the number of vertices, $m$ is the number of…

Data Structures and Algorithms · Computer Science 2019-08-27 Vít Kalisz , Pavel Klavík , Peter Zeman

Enumerating minimal transversals in a hypergraph is a notoriously hard problem. It can be reduced to enumerating minimal dominating sets in a graph, in fact even to enumerating minimal dominating sets in an incomparability graph. We provide…

Discrete Mathematics · Computer Science 2025-11-27 Marthe Bonamy , Oscar Defrain , Piotr Micek , Lhouari Nourine

Large graphs are sometimes studied through their degree sequences (power law or regular graphs). We study graphs that are uniformly chosen with a given degree sequence. Under mild conditions, it is shown that sequences of such graphs have…

Probability · Mathematics 2011-08-31 Sourav Chatterjee , Persi Diaconis , Allan Sly

Subgraph matching is a challenging problem with a wide range of applications in database systems, biochemistry, and cognitive science. It involves determining whether a given query graph is present within a larger target graph. Traditional…

Machine Learning · Computer Science 2023-12-05 Duc Q. Nguyen , Thanh Toan Nguyen , Tho quan

Binary classification problems can be naturally modeled as bipartite graphs, where we attempt to classify right nodes based on their left adjacencies. We consider the case of labeled bipartite graphs in which some labels and edges are not…

Combinatorics · Mathematics 2018-11-13 R. W. R. Darling , Mark L. Velednitsky

Vizing's celebrated theorem states that every simple graph with maximum degree $\Delta$ admits a $(\Delta+1)$ edge coloring which can be found in $O(m \cdot n)$ time on $n$-vertex $m$-edge graphs. This is just one color more than the…

Data Structures and Algorithms · Computer Science 2024-05-24 Sepehr Assadi

Graph Neural Networks (GNNs) require a large number of labeled graph samples to obtain good performance on the graph classification task. The performance of GNNs degrades significantly as the number of labeled graph samples decreases. To…

Machine Learning · Computer Science 2023-09-20 Abdullah Alchihabi , Yuhong Guo

The Boolean Hidden Matching (BHM) problem, introduced in a seminal paper of Gavinsky et. al. [STOC'07], has played an important role in the streaming lower bounds for graph problems such as triangle and subgraph counting, maximum matching,…

Data Structures and Algorithms · Computer Science 2022-01-31 Michael Kapralov , Amulya Musipatla , Jakab Tardos , David P. Woodruff , Samson Zhou

We study cross-graph charging schemes for graphs drawn in the plane. These are charging schemes where charge is moved across vertices of different graphs. Such methods have been recently applied to obtain various properties of…

Computational Geometry · Computer Science 2012-09-04 Micha Sharir , Adam Sheffer

Graph Neural Networks (GNNs) have been widely adopted for their ability to compute expressive node representations in graph datasets. However, serving GNNs on large graphs is challenging due to the high communication, computation, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-16 Geon-Woo Kim , Donghyun Kim , Jeongyoon Moon , Henry Liu , Tarannum Khan , Anand Iyer , Daehyeok Kim , Aditya Akella

Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…

Computational Complexity · Computer Science 2020-06-04 Massimo Equi , Roberto Grossi , Veli Mäkinen

The main goal in distributed symmetry-breaking is to understand the locality of problems; i.e., the radius of the neighborhood that a node needs to explore in order to arrive at its part of a global solution. In this work, we study the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-23 Seri Khoury , Manish Purohit , Aaron Schild , Joshua Wang

IC-planar graphs are those graphs that admit a drawing where no two crossed edges share an end-vertex and each edge is crossed at most once. They are a proper subfamily of the 1-planar graphs. Given an embedded IC-planar graph $G$ with $n$…

Computational Geometry · Computer Science 2016-07-19 Franz J. Brandenburg , Walter Didimo , William S. Evans , Philipp Kindermann , Giuseppe Liotta , Fabrizio Montecchiani

In the subgraph counting problem, we are given a input graph $G(V, E)$ and a target graph $H$; the goal is to estimate the number of occurrences of $H$ in $G$. Our focus here is on designing sublinear-time algorithms for approximately…

Data Structures and Algorithms · Computer Science 2018-11-20 Sepehr Assadi , Michael Kapralov , Sanjeev Khanna

We study a generalisation of the bipartite Ramsey numbers to blowups of graphs. For a graph $G$, denote the $t$-blowup of $G$ by $G[t]$. We say that $G$ is $r$-Ramsey for $H$, and write $G \stackrel{r}{\rightarrow} H$, if every…

Combinatorics · Mathematics 2021-01-18 Victor Souza

Recently we presented the first algorithm for maintaining the set of nodes reachable from a source node in a directed graph that is modified by edge deletions with $o(mn)$ total update time, where $m$ is the number of edges and $n$ is the…

Data Structures and Algorithms · Computer Science 2016-12-13 Monika Henzinger , Sebastian Krinninger , Danupon Nanongkai

Szemer\'edi's regularity lemma and its variants are some of the most powerful tools in combinatorics. In this paper, we establish several results around the regularity lemma. First, we prove that whether or not we include the condition that…

Combinatorics · Mathematics 2019-04-12 Jacob Fox , László Miklós Lovász , Yufei Zhao

Machine learning techniques have recently been adopted in various applications in medicine, biology, chemistry, and material engineering. An important task is to predict the properties of molecules, which serves as the main subroutine in…

Machine Learning · Computer Science 2019-11-12 Shengchao Liu , Mehmet Furkan Demirel , Yingyu Liang

We study the problem of finding maximal exact matches (MEMs) between a query string $Q$ and a labeled graph $G$. MEMs are an important class of seeds, often used in seed-chain-extend type of practical alignment methods because of their…

Data Structures and Algorithms · Computer Science 2023-07-04 Nicola Rizzo , Manuel Cáceres , Veli Mäkinen

We introduce a regularity method for sparse graphs, with new regularity and counting lemmas which use the Schatten-von-Neumann norms to measure uniformity. This leads to $k$-cycle removal lemmas in subgraphs of mildly-pseudorandom graphs,…

Combinatorics · Mathematics 2023-05-16 Alexandru Pascadi