Related papers: VLSI layouts and DNA physical mappings

For a positive integer $k$, a $k$-colouring of a graph $G=(V,E)$ is a mapping $c: V\rightarrow\{1,2,...,k\}$ such that $c(u)\neq c(v)$ whenever $uv\in E$. The Colouring problem is to decide, for a given $G$ and $k$, whether a $k$-colouring…

Graphs are one of the most important data structures for representing pairwise relations between objects. Specifically, a graph embedded in a Euclidean space is essential to solving real problems, such as physical simulations. A crucial…

We investigate the relative complexity of the graph isomorphism problem (GI) and problems related to the reconstruction of a graph from its vertex-deleted or edge-deleted subgraphs (in particular, deck checking (DC) and legitimate deck (LD)…

For a positive integer $k$ and graph $G=(V,E)$, a $k$-colouring of $G$ is a mapping $c: V\rightarrow\{1,2,\ldots,k\}$ such that $c(u)\neq c(v)$ whenever $uv\in E$. The $k$-Colouring problem is to decide, for a given $G$, whether a…

A partition $(V_1,\ldots,V_k)$ of the vertex set of a graph $G$ with a (not necessarily proper) colouring $c$ is colourful if no two vertices in any $V_i$ have the same colour and every set $V_i$ induces a connected graph. The COLOURFUL…

We classify graphs and, more generally, finite relational structures that are identified by C2, that is, two-variable first-order logic with counting. Using this classification, we show that it can be decided in almost linear time whether a…

Background: Cancers are highly heterogeneous with different subtypes. These subtypes often possess different genetic variants, present different pathological phenotypes, and most importantly, show various clinical outcomes such as varied…

This thesis focuses on two concepts which are widely studied in the field of computational geometry. Namely, visibility and unit disk graphs. In the field of visibility, we have studied the conflict-free chromatic guarding of polygons, for…

This work establishes the complexity class of several instances of the S-packing coloring problem: for a graph G, a positive integer k and a non decreasing list of integers S = (s\_1 , ..., s\_k ), G is S-colorable, if its vertices can be…

Let $c$ be a proper $k$-coloring of a connected graph $G$ and $\Pi=(C_1,C_2,...,C_k)$ be an ordered partition of $V(G)$ into the resulting color classes. For a vertex $v$ of $G$, the color code of $v$ with respect to $\Pi$ is defined to be…

We advocate here the use of computational logic for systems biology, as a \emph{unified and safe} framework well suited for both modeling the dynamic behaviour of biological systems, expressing properties of them, and verifying these…

In this paper, we investigate the $k$-path coloring problem, a variant of vertex coloring arising in the context of integrated circuit manufacturing. In this setting, typical industrial instances exhibit a `tree-like' structure. We exploit…

We introduce and study a novel generalization of the classical Knapsack Problem (KP), called the Colored Knapsack Problem (CKP). In this problem, the items are partitioned into classes of colors and the packed items need to be ordered such…

Given a planar graph G and a sequence C_1,...,C_q, where each C_i is a family of vertex subsets of G, we wish to find a plane embedding of G, if any exists, such that for each i in {1,...,q}, there is a face F_i in the embedding whose…

Let $c$ be a proper $k$-coloring of a connected graph $G$ and $\Pi=(C_1,C_2,...,C_k)$ be an ordered partition of $V(G)$ into the resulting color classes. For a vertex $v$ of $G$, the color code of $v$ with respect to $\Pi$ is defined to be…

In this paper we study the generalized vertex cover problem (GVC), which is a generalization of various well studied combinatorial optimization problems. GVC is shown to be equivalent to the unconstrained binary quadratic programming…

Intrinsic image decomposition is a challenging, long-standing computer vision problem for which ground truth data is very difficult to acquire. We explore the use of synthetic data for training CNN-based intrinsic image decomposition…

In this paper we resolve the complexity of the isomorphism problem on all but finitely many of the graph classes characterized by two forbidden induced subgraphs. To this end we develop new techniques applicable for the structural and…

Work on different classification problems is described as: the classification of integrable vector evolution equations, NLS systems with two vector unknowns, systems with one scalar and one vector unknown, classification of integrable…

We study the complexity of locally checkable labeling (LCL) problems on $\mathbb{Z}^n$ from the point of view of descriptive set theory, computability theory, and factors of i.i.d. Our results separate various complexity classes that were…