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We study compact straight-line embeddings of trees. We show that perfect binary trees can be embedded optimally: a tree with $n$ nodes can be drawn on a $\sqrt n$ by $\sqrt n$ grid. We also show that testing whether a given binary tree has…

Computational Geometry · Computer Science 2018-09-03 Hugo A. Akitaya , Maarten Löffler , Irene Parada

A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…

Artificial Intelligence · Computer Science 2014-01-16 Neil C. A. Moore , Patrick Prosser

The perturbation expansion of the solution of a fixed point equation or of an ordinary differential equation may be expressed as a power series in the perturbation parameter. The terms in this series are indexed by rooted trees and depend…

Combinatorics · Mathematics 2021-03-30 William G. Faris

Metric learning has the aim to improve classification accuracy by learning a distance measure which brings data points from the same class closer together and pushes data points from different classes further apart. Recent research has…

Machine Learning · Computer Science 2018-05-21 Benjamin Paaßen

While most neural generative models generate outputs in a single pass, the human creative process is usually one of iterative building and refinement. Recent work has proposed models of editing processes, but these mostly focus on editing…

Machine Learning · Computer Science 2021-03-08 Ziyu Yao , Frank F. Xu , Pengcheng Yin , Huan Sun , Graham Neubig

Trees without vertices of degree $2$ are sometimes named topological trees. In this work, we bring forward the study of the inducibility of (rooted) topological trees with a given number of leaves. The inducibility of a topological tree $S$…

Combinatorics · Mathematics 2018-02-20 Audace Amen Vioutou Dossou-Olory , Stephan Wagner

The first-order theory of finite and infinite trees has been studied since the eighties, especially by the logic programming community. Following Djelloul, Dao and Fr\"uhwirth, we consider an extension of this theory with an additional…

Logic in Computer Science · Computer Science 2020-08-10 Fabian Zaiser , C. -H. Luke Ong

We consider stochastic processes with (or without) memory whose evolution is encoded by a finite or infinite rooted tree. The main goal is to compare the entropy rates of a given base process and a second one, to be considered as a…

Information Theory · Computer Science 2017-04-21 Thomas Hirschler , Wolfgang Woess

We consider the space of embeddings of finitely many circles that bound disks in non-positively curved surfaces. We index the connected components of this space with finite rooted trees and show that the connected components are classifying…

Algebraic Topology · Mathematics 2026-01-21 Ryan C. Gelnett

Tree embedding has been a fundamental method in algorithm design with wide applications. We focus on the efficiency of building tree embedding in various computational settings under high-dimensional Euclidean $\mathbb{R}^d$. We devise a…

Data Structures and Algorithms · Computer Science 2026-01-13 Gramoz Goranci , Shaofeng H. -C. Jiang , Peter Kiss , Qihao Kong , Yi Qian , Eva Szilagyi

Phylogenetics is now fundamental in life sciences, providing insights into the earliest branches of life and the origins and spread of epidemics. However, finding suitable phylogenies from the vast space of possible trees remains…

Populations and Evolution · Quantitative Biology 2024-01-24 Matthew J Penn , Neil Scheidwasser , Joseph Penn , Christl A Donnelly , David A Duchêne , Samir Bhatt

We study upward planar straight-line embeddings (UPSE) of directed trees on given point sets. The given point set $S$ has size at least the number of vertices in the tree. For the special case where the tree is a path $P$ we show that: (a)…

Computational Geometry · Computer Science 2020-12-22 Elena Arseneva , Pilar Cano , Linda Kleist , Tamara Mchedlidze , Saeed Mehrabi , Irene Parada , Pavel Valtr

We construct the ordinary irreducible representations of the group of automorphisms of a finite rooted tree and we get a natural parametrization of them. To achieve this goals, we introduce and study the combinatorics of tree compositions,…

Representation Theory · Mathematics 2025-04-15 Fabio Scarabotti

Recent empirical studies have identified fixed point iteration phenomena in deep neural networks, where the hidden state tends to stabilize after several layers, showing minimal change in subsequent layers. This observation has spurred the…

Machine Learning · Computer Science 2024-10-16 Yekun Ke , Xiaoyu Li , Yingyu Liang , Zhenmei Shi , Zhao Song

Representation learning is the first step in automating tasks such as research paper recommendation, classification, and retrieval. Due to the accelerating rate of research publication, together with the recognised benefits of…

Digital Libraries · Computer Science 2023-03-22 Eoghan Cunningham , Derek Greene

In social networks, information and influence diffuse among users as cascades. While the importance of studying cascades has been recognized in various applications, it is difficult to observe the complete structure of cascades in practice.…

Social and Information Networks · Computer Science 2012-10-15 Bo Zong , Yinghui Wu , Ambuj K. Singh , Xifeng Yan

We introduce the notion of a restricted exchangeable partition of $\mathbb{N}$. We obtain integral representations, consider associated fragmentations, embeddings into continuum random trees and convergence to such limit trees. In…

Probability · Mathematics 2012-11-12 Bo Chen , Matthias Winkel

Trees are partial orders in which every element has a linearly ordered set of predecessors. Here we initiate the exploration of the structural theory of trees with the study of different notions of \emph{branching in trees} and of…

Combinatorics · Mathematics 2023-01-18 Valentin Goranko , Ruaan Kellerman , Alberto Zanardo

Based on decision trees, many fields have arguably made tremendous progress in recent years. In simple words, decision trees use the strategy of "divide-and-conquer" to divide the complex problem on the dependency between input features and…

Machine Learning · Computer Science 2021-01-22 Jinxiong Zhang

The paper surveys recent extensions of the Long-Short Term Memory networks to handle tree structures from the perspective of learning non-trivial forms of isomorph structured transductions. It provides a discussion of modern TreeLSTM…

Machine Learning · Computer Science 2019-02-06 Davide Bacciu , Antonio Bruno