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When biological foundation models such as scGPT and Geneformer process single-cell gene expression, what geometric and topological structure forms in their internal representations? Is that structure biologically meaningful or a training…
We give an analogue of the classical exponential map on Lie groups for Hopf $*$-algebras with differential calculus. The major difference with the classical case is the interpretation of the value of the exponential map, classically an…
Graphene sheets with regular perforations, dubbed as antidot lattices, have theoretically been predicted to have a number of interesting properties. Their recent experimental realization with lattice constants below 100 nanometers stresses…
We give a geometric interpretation of the building associated to the real Lie group E_6(-14) in terms of its 54-dimensional module.
Inspired by the topological insulator circuit proposed and experimentally verified by Jia., et al. \cite{1}, we theoretically realized the topological Lieb lattice, a line centered square lattice with rich topological properties, in a…
Tilings of the hyperbolic plane are of significant interest among many branches of mathematics, physics and computer science. Yet, their construction remains a non-trivial task. Current approaches primarily use tree-based recursive…
We propose and analyze magnetic traps and lattices for electrons in semiconductors. We provide a general theoretical framework and show that thermally stable traps can be generated by magnetically driving the particle's internal spin…
It was conjectured by Eells that the only harmonic maps $f : S^3 \to S^2$ are Hopf fibrations composed with conformal maps of $S^2$. We support this conjecture by proving its validity under suitable conditions on the Hessian and the…
Obtaining sparse, interpretable representations of observable data is crucial in many machine learning and signal processing tasks. For data representing flows along the edges of a graph, an intuitively interpretable way to obtain such…
Honeycomb lattice can support electronic states exhibiting Dirac energy dispersion, with graphene as the icon. We propose to derive nontrivial topology by grouping six neighboring sites of honeycomb lattice into hexagons and enhancing the…
We show that uniform lattices of isometries of products of real hyperbolic spaces act properly discontinuously and cocompactly on a median space. For lattices in products of at least two factors, this is the strongest degree of…
Topological insulators are studied via tight-binding approximations of longitudinally driven photonic lattices with three lattice sites per unit cell. Two cases are considered in detail: Lieb and Kagome lattices. The lattice is decomposed…
Periodic lattices are natural generalizations of lattices, which arise naturally in diophantine approximations with rationals of bounded denominators. In this paper, we prove analogues of classical theorems in geometry of numbers for…
With the growing maturity of additive manufacturing, the fabrication of architected or lattice-based metamaterials has become a reality for industrial applications. These materials combine lightweight design with tailored mechanical…
We propose a model of the functional architecture of curvature sensible cells in the visual cortex that associates curvature with scale. The feature space of orientation and position is naturally enhanced via its oriented prolongation,…
Two-, three- and four-dimensional representations of Penrose tilings of the plane are described. The vertices that occur in these representations lie on lattices. Symmetries and methods of visualizing these representations are discussed.…
We study the geometry of elliptic fibrations satisfying the conditions of Step 8 of Tate's algorithm. We call such geometries F$_4$-models, as the dual graph of their special fiber is the twisted affine Dynkin diagram…
It is very well known that Hopf real hypersurfaces in the complex projective space can be locally characterized as tubes over complex submanifolds. This also holds true for some, but not all, Hopf real hypersurfaces in the complex…
Molecular graphs generally contain subgraphs (known as groups) that are identifiable and significant in composition, functionality, geometry, etc. Flat latent representations (node embeddings or graph embeddings) fail to represent, and…
Periodic lattices have been widely explored for decades, owing to their peculiar vibrational behavior. On the other hand, certain types of aperiodic lattices have enabled new phenomena that may not be otherwise attainable in periodic ones.…