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In phylogenetic inference one is interested in obtaining samples from the posterior distribution over the tree space on the basis of some observed DNA sequence data. The challenge is to obtain samples from this target distribution without…

Statistics Theory · Mathematics 2007-06-13 Raazesh Sainudiin , Thomas York

Likelihood-free methods, such as approximate Bayesian computation, are powerful tools for practical inference problems with intractable likelihood functions. Markov chain Monte Carlo and sequential Monte Carlo variants of approximate…

Computation · Statistics 2019-02-26 David J. Warne , Ruth E. Baker , Matthew J. Simpson

Rejection Sampling is a fundamental Monte-Carlo method. It is used to sample from distributions admitting a probability density function which can be evaluated exactly at any given point, albeit at a high computational cost. However,…

Machine Learning · Statistics 2018-10-23 Juliette Achdou , Joseph C. Lam , Alexandra Carpentier , Gilles Blanchard

Monte Carlo methods are often necessary for the implementation of optimal Bayesian estimators. A fundamental technique that can be used to generate samples from virtually any target probability distribution is the so-called rejection…

Computation · Statistics 2011-11-22 Luca Martino , Joaquín Míguez

Boltzmann samplers, introduced by Duchon et al. in 2001, make it possible to uniformly draw approximate size objects from any class which can be specified through the symbolic method. This, through by evaluating the associated generating…

Discrete Mathematics · Computer Science 2014-11-14 Olivier Bodini , Jérémie Lumbroso , Nicolas Rolin

We provide a method for approximating Bayesian inference using rejection sampling. We not only make the process efficient, but also dramatically reduce the memory required relative to conventional methods by combining rejection sampling…

Machine Learning · Computer Science 2015-12-04 Nathan Wiebe , Christopher Granade , Ashish Kapoor , Krysta M Svore

We present a data augmentation scheme to perform Markov chain Monte Carlo inference for models where data generation involves a rejection sampling algorithm. Our idea, which seems to be missing in the literature, is a simple scheme to…

Computation · Statistics 2015-08-04 Vinayak Rao , Lizhen Lin , David Dunson

The paper proposes a Riemannian Manifold Hamiltonian Monte Carlo sampler to resolve the shortcomings of existing Monte Carlo algorithms when sampling from target densities that may be high dimensional and exhibit strong correlations. The…

Computation · Statistics 2019-12-18 Mark Girolami , Ben Calderhead , Siu A. Chin

We consider an acceptance-rejection sampler based on a deterministic driver sequence. The deterministic sequence is chosen such that the discrepancy between the empirical target distribution and the target distribution is small. We use…

Statistics Theory · Mathematics 2014-05-06 Houying Zhu , Josef Dick

Estimating the unknown density from which a given independent sample originates is more difficult than estimating the mean, in the sense that for the best popular non-parametric density estimators, the mean integrated square error converges…

Statistics Theory · Mathematics 2021-09-08 Pierre L'Ecuyer , Florian Puchhammer , Amal Ben Abdellah

Astronomers are often confronted with funky populations and distributions of objects: brighter objects are more likely to be detected; targets are selected based on colour cuts; imperfect classification yields impure samples. Failing to…

Cosmology and Nongalactic Astrophysics · Physics 2017-06-21 Samuel R. Hinton , Alex Kim , Tamara M. Davis

Rejection sampling is a well-known method to sample from a target distribution, given the ability to sample from a given distribution. The method has been first formalized by von Neumann (1951) and has many applications in classical…

Quantum Physics · Physics 2015-03-19 Maris Ozols , Martin Roetteler , Jérémie Roland

A number of distributions that arise in statistical applications can be expressed in the form of a weighted density: the product of a base density and a nonnegative weight function. Generating variates from such a distribution may be…

Methodology · Statistics 2025-03-18 Andrew M. Raim , James A. Livsey , Kyle M. Irimata

We present Bayesian techniques for solving inverse problems which involve mean-square convergent random approximations of the forward map. Noisy approximations of the forward map arise in several fields, such as multiscale problems and…

Numerical Analysis · Mathematics 2021-11-08 Giacomo Garegnani

Rejection sampling is a common tool for low dimensional problems ($d \leq 2$), often touted as an "easy" way to obtain valid samples from a distribution $f(\cdot)$ of interest. In practice it is non-trivial to apply, often requiring…

Computation · Statistics 2023-10-03 Edward Raff , Mark McLean , James Holt

Rejection sampling is a popular method used to generate numbers that follow some given distribution. We study the use of this method to generate random numbers in the unit interval from increasing probability density functions. We focus on…

Data Structures and Algorithms · Computer Science 2025-09-30 Louis-Roy Langevin , Alex Waese-Perlman

Gaussian time-series models are often specified through their spectral density. Such models present several computational challenges, in particular because of the non-sparse nature of the covariance matrix. We derive a fast approximation of…

Computation · Statistics 2012-11-20 Nicolas Chopin , Judith Rousseau , Brunero Liseo

Bayesian hierarchical modeling is a popular approach to capturing unobserved heterogeneity across individual units. However, standard estimation methods such as Markov chain Monte Carlo (MCMC) can be impracticable for modeling outcomes from…

Methodology · Statistics 2014-11-04 Michael Braun , Paul Damien

The Monte Carlo algorithm is increasingly utilized, with its central step involving computer-based random sampling from stochastic models. While both Markov Chain Monte Carlo (MCMC) and Reject Monte Carlo serve as sampling methods, the…

Computation · Statistics 2024-02-28 Fengyu Li , Huijiao Yu , Jun Yan , Xianyong Meng

In Bayesian inverse problems, the posterior distribution is used to quantify uncertainty about the reconstructed solution. In practice, Markov chain Monte Carlo algorithms often are used to draw samples from the posterior distribution.…

Numerical Analysis · Mathematics 2018-03-13 D. Andrew Brown , Arvind Saibaba , Sarah Vallélian
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