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Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of…

A metric phylogenetic tree relating a collection of taxa induces weighted rooted triples and weighted quartets for all subsets of three and four taxa, respectively. New intertaxon distances are defined that can be calculated from these…

Populations and Evolution · Quantitative Biology 2020-02-12 Samaneh Yourdkhani , John A. Rhodes

A $k$-ranking of a graph $G$ is a labeling of its vertices from $\{1,\ldots,k\}$ such that any nontrivial path whose endpoints have the same label contains a larger label. The least $k$ for which $G$ has a $k$-ranking is the ranking number…

Combinatorics · Mathematics 2014-01-14 Daniel C. McDonald

We revisit the \textsc{$k$-Secluded Tree} problem. Given a vertex-weighted undirected graph $G$, its objective is to find a maximum-weight induced subtree $T$ whose open neighborhood has size at most $k$. We present a fixed-parameter…

Data Structures and Algorithms · Computer Science 2022-06-27 Huib Donkers , Bart M. P. Jansen , Jari J. H. de Kroon

Using the Lagrange inversion formula, $t$-ary trees are enumerated with respect to edge type (left, middle, right for ternary trees).

Combinatorics · Mathematics 2022-05-27 Helmut Prodinger

We study the height of a spanning tree $T$ of a graph $G$ obtained by starting with a single vertex of $G$ and repeatedly selecting, uniformly at random, an edge of $G$ with exactly one endpoint in $T$ and adding this edge to $T$.

Probability · Mathematics 2017-07-05 Luc Devroye , Vida Dujmović , Alan Frieze , Abbas Mehrabian , Pat Morin , Bruce Reed

We consider the rooted trees which not have isomorphic representation and introduce a conception of complexity a natural number also. The connection between quantity such trees with $n$ edges and a complexity of natural number $n$ is…

Combinatorics · Mathematics 2012-05-03 B. S. Kochkarev

We prove the following sharp estimate for the number of spanning trees of a graph in terms of its vertex-degrees: a simple graph $G$ on $n$ vertices has at most $(1/n^{2}) \prod_{v \in V(G)} (d(v)+1)$ spanning trees. This result is tight…

Combinatorics · Mathematics 2022-04-14 Steven Klee , Bhargav Narayanan , Lisa Sauermann

A vertex whose removal in a graph $G$ increases the number of components of $G$ is called a cut vertex. For all $n,c$, we determine the maximum number of connected induced subgraphs in a connected graph with order $n$ and $c$ cut vertices,…

Combinatorics · Mathematics 2019-10-11 Audace A. V. Dossou-Olory

A random forest prediction can be computed by the scalar product of the labels of the training examples and a set of weights that are determined by the leafs of the forest into which the test object falls; each prediction can hence be…

Machine Learning · Computer Science 2023-11-27 Henrik Boström

Let $T$ be a tree with $t$ edges. We show that the number of isomorphic (labeled) copies of $T$ in a graph $G = (V,E)$ of minimum degree at least $t$ is at least \[2|E| \prod_{v \in V} (d(v) - t + 1)^{\frac{(t-1)d(v)}{2|E|}}.\]…

Combinatorics · Mathematics 2015-11-24 Dhruv Mubayi , Jacques Verstraete

We investigate the class of the edge-shelling convex geometries of trees. The edge-shelling convex geometry of a tree is the convex geometry consisting of the sets of edges of the subtrees. For the edge-shelling convex geometry of a tree,…

Combinatorics · Mathematics 2009-08-25 Kenji Kashiwabara , Masataka Nakamura

Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely…

Combinatorics · Mathematics 2013-03-12 Filippo Disanto

We consider a Gibbs distribution over all spanning trees of an undirected, edge weighted finite graph, where, up to normalization, the probability of each tree is given by the product of its edge weights. Defining the weighted degree of a…

Discrete Mathematics · Computer Science 2024-10-18 Enrique Fita Sanmartín , Christoph Schnörr , Fred A. Hamprecht

Tree search algorithms, such as branch-and-bound, are the most widely used tools for solving combinatorial and nonconvex problems. For example, they are the foremost method for solving (mixed) integer programs and constraint satisfaction…

Artificial Intelligence · Computer Science 2018-05-18 Maria-Florina Balcan , Travis Dick , Tuomas Sandholm , Ellen Vitercik

We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…

Combinatorics · Mathematics 2017-02-28 Reinhard Diestel

Parameterised subgraph counting problems are the most thoroughly studied topic in the theory of parameterised counting, and there has been significant recent progress in this area. Many of the existing tractability results for parameterised…

Computational Complexity · Computer Science 2015-06-01 Kitty Meeks

Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…

Data Structures and Algorithms · Computer Science 2019-07-10 Cedric Chauve , Mark Jones , Manuel Lafond , Céline Scornavacca , Mathias Weller

A weighted bicolored plane tree is a bicolored plane tree whose edges are endowed with positive integral weights. The degree of a vertex is defined as the sum of the weights of the edges incident to this vertex. Using the theory of dessins…

Number Theory · Mathematics 2013-06-19 F. Pakovich , A. Zvonkin

Let $G=(V_G, E_G)$ be a simple connected graph. The eccentric distance sum of $G$ is defined as $\xi^{d}(G) = \sum_{v\in V_G}\varepsilon_{G}(v)D_{G}(v)$, where $\varepsilon_G(v)$ is the eccentricity of the vertex $v$ and $D_G(v) =…

Combinatorics · Mathematics 2012-07-03 Shuchao Li , Meng Zhang