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Geometric graphs are a special kind of graph with geometric features, which are vital to model many scientific problems. Unlike generic graphs, geometric graphs often exhibit physical symmetries of translations, rotations, and reflections,…

In this article we discuss applications of neural networks to recognising knots and, in particular, to the unknotting problem. One of motivations for this study is to understand how neural networks work on the example of a problem for which…

Geometric Topology · Mathematics 2022-11-28 L. H. Kauffman , N. E. Russkikh , I. A. Taimanov

Mosaic knots, first introduced in 2008 by Lomanoco and Kauffman, have become a useful tool for studying combinatorial invariants of knots and links. In 2020, by considering knot mosaics on $n \times n$ polygons with boundary edge…

Geometric Topology · Mathematics 2024-12-23 Taylor Martin , Rachel Meyers

Graph theory provides a language for studying the structure of relations, and it is often used to study interactions over time too. However, it poorly captures the both temporal and structural nature of interactions, that calls for a…

Social and Information Networks · Computer Science 2017-10-12 Matthieu Latapy , Tiphaine Viard , Clémence Magnien

The traditional study of plane and space algebraic curves by looking at their tangent vectors, curvatures and torsions provides geometric, but unfortunately not sufficient information about individual curves in order to be able to…

Algebraic Geometry · Mathematics 2021-03-04 Hana Melanova

Graph neural networks provide a powerful toolkit for embedding real-world graphs into low-dimensional spaces according to specific tasks. Up to now, there have been several surveys on this topic. However, they usually lay emphasis on…

Machine Learning · Computer Science 2022-02-28 Yu Zhou , Haixia Zheng , Xin Huang , Shufeng Hao , Dengao Li , Jumin Zhao

We define the virtual bridge number $vb(K)$ and the virtual unknotting number $vu(K)$ invariants for virtual knots. For ordinary knots $K$ they are closely related to the bridge number $b(K)$ and the unknotting number $u(K)$ and we have…

Geometric Topology · Mathematics 2014-04-24 Evarist Byberi , Vladimir Chernov

Graph Neural Networks (GNNs), neural network architectures targeted to learning representations of graphs, have become a popular learning model for prediction tasks on nodes, graphs and configurations of points, with wide success in…

Machine Learning · Computer Science 2022-04-19 Stefanie Jegelka

Effective traffic prediction is a cornerstone of intelligent transportation systems, enabling precise forecasts of traffic flow, speed, and congestion. While traditional spatio-temporal graph neural networks (ST-GNNs) have achieved notable…

Machine Learning · Computer Science 2025-01-20 Xiaoyang Cao , Dingyi Zhuang , Jinhua Zhao , Shenhao Wang

Embedding static graphs in low-dimensional vector spaces plays a key role in network analytics and inference, supporting applications like node classification, link prediction, and graph visualization. However, many real-world networks…

Machine Learning · Computer Science 2021-07-23 Claudio D. T. Barros , Matheus R. F. Mendonça , Alex B. Vieira , Artur Ziviani

We develop a general diagrammatic theory of welded graphs, and provide an extension of Satoh's Tube map from welded graphs to ribbon surface-links. As a topological application, we obtain a complete link-homotopy classification of so-called…

Geometric Topology · Mathematics 2025-07-29 Benjamin Audoux , Jean-Baptiste Meilhan , Akira Yasuhara

We give a brief survey of some known results on intrinsically linked or knotted graphs.

Geometric Topology · Mathematics 2020-06-15 Ramin Naimi

We introduce the warping matrix which is a new description of oriented knots from a viewpoint of warping degree.

Geometric Topology · Mathematics 2015-08-17 Ayaka Shimizu

The classical knot recognition problem is the problem of determining whether the virtual knot represented by a given diagram is classical. We prove that this problem is in NP, and we give an exponential time algorithm for the problem.

Geometric Topology · Mathematics 2022-06-08 Kazuhiro Ichihara , Yuya Nishimura , Seiichi Tani

Graph representation learning plays an important role in many graph mining applications, but learning embeddings of large-scale graphs remains a problem. Recent works try to improve scalability via graph summarization -- i.e., they learn…

Machine Learning · Computer Science 2022-07-05 Houquan Zhou , Shenghua Liu , Danai Koutra , Huawei Shen , Xueqi Cheng

Geometric interpretations of some virtual knot invariants are given in terms of invariants of links in $\mathbb{S}^3$. Alexander polynomials of almost classical knots are shown to be specializations of the multi-variable Alexander…

Geometric Topology · Mathematics 2018-07-27 Micah Chrisman , Robert G. Todd

We define a natural class of graphs by generalizing prior notions of visibility, allowing the representing regions and sightlines to be arbitrary. We consider mainly the case of compact connected representing regions, proving two results…

Combinatorics · Mathematics 2007-05-23 Mike Develin , Stephen Hartke , David Petrie Moulton

In 2002, D. Hrencecin and L.H. Kauffman defined a filamentation invariant on oriented chord diagrams that may determine whether the corresponding flat virtual knot diagrams are non-trivial. A virtual knot diagram is non-classical if its…

Geometric Topology · Mathematics 2007-05-23 William J. Schellhorn

We give a fresh introduction to the Khovanov Homology theory for knots and links, with special emphasis on its extension to tangles, cobordisms and 2-knots. By staying within a world of topological pictures a little longer than in other…

Geometric Topology · Mathematics 2014-11-11 Dror Bar-Natan

Graph Neural Networks (GNNs) have received a lot of interest in the recent times. From the early spectral architectures that could only operate on undirected graphs per a transductive learning paradigm to the current state of the art…

Machine Learning · Computer Science 2021-05-18 Pushkar Mishra , Aleksandra Piktus , Gerard Goossen , Fabrizio Silvestri
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