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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

In this paper, we study the dualization in distributive lattices, a generalization of the well-known hypergraph dualization problem. We in particular propose equivalent formulations of the problem in terms of graphs, hypergraphs, and…

Discrete Mathematics · Computer Science 2020-05-26 Oscar Defrain , Lhouari Nourine , Takeaki Uno

Periodic trees are combinatorial structures which are in bijection with cluster tilting objects in cluster categories of affine type $\tilde{A}_{n-1}$. The internal edges of the tree encode the $c$-vectors corresponding to the cluster…

Representation Theory · Mathematics 2014-07-03 Kiyoshi Igusa , Gordana Todorov , Jerzy Weyman

We consider 3 (weighted) posets associated with a graph G - the poset P(G) of distinct induced unlabelled subgraphs, the lattice Omega(G) of distinct unlabelled graphs induced by connected partitions, and the poset Q(G) of distinct…

Combinatorics · Mathematics 2015-08-19 Bhalchandra D. Thatte

We consider labeled $r$-uniform hypertrees having $n \ge r \ge 2$ vertices. The number of hyperedges in such a hypertree is $m = (n - 1)/(r - 1)$. We show that there are exactly $f(n, r) = \frac{(n-1)! n^{m-1}}{(r-1)!^m m!}$ $r$-uniform…

Combinatorics · Mathematics 2018-12-18 Arjun Pitchanathan , Saswata Shannigrahi

It is known that the Ehrhart polynomials of cross-polytopes, as well as of pyramids over them, have positive coefficients. We give a combinatorial proof of this fact by showing that a scaled version of the Ehrhart polynomials are generating…

Combinatorics · Mathematics 2025-12-10 Krishna Menon , Emil Verkama

Let $\pi:{\mathbb R}^n \to {\mathbb R}^d$ be any linear projection, let $A$ be the image of the standard basis. Motivated by Postnikov's study of postitive Grassmannians via plabic graphs and Galashin's connection of plabic graphs to slices…

Combinatorics · Mathematics 2021-11-05 Jorge Alberto Olarte , Francisco Santos

Motivated by work of Gusein-Zade, Luengo, and Melle-Hern\'andez, we study a specific generating series of arm and leg statistics on partitions, which is known to compute the Poincar\'e polynomials of Z_3-equivariant Hilbert schemes of…

Combinatorics · Mathematics 2018-10-16 Deborah Castro , Dustin Ross

Motivation coming from the study of affine Weyl groups, a structure of ranked poset is defined on the set of circular permutations in $S_n$ (that is, $n$-cycles). It is isomorphic to the poset of so-called admitted vectors, and to an…

Combinatorics · Mathematics 2020-10-14 Antoine Abram , Nathan Chapelier-Laget , Christophe Reutenauer

In this article we investigate a class of linear error correcting codes in relation with the order polytopes. In particular we consider the order polytopes of tree posets and bipartite posets. We calculate the parameters of the associated…

Combinatorics · Mathematics 2021-07-28 Mahir Bilen Can , Takayuki Hibi

We use a classical result of McCord and reduction methods of finite spaces to prove a generalization of Thomason's theorem on homotopy colimits over posets. In particular this allows us to characterize the homotopy colimits of diagrams of…

Algebraic Topology · Mathematics 2014-07-23 Ximena Fernandez , Elias Gabriel Minian

Given a directed graph $D$ with transitive closure $\operatorname{tc}(D)$ and path hypergraph $\mathbb{P}(D)$, we study the connections between the (acyclic) reorientation poset of $\operatorname{tc}(D)$, the (acyclic) sourcing poset of…

Combinatorics · Mathematics 2025-08-05 Antoine Abram , Jose Bastidas , Félix Gélinas , Vincent Pilaud , Andrew Sack

We construct a tree-based dependence structure for the representation of binomial, Poisson and Gaussian random vectors having a given covariance matrix, using sums of independent random variables. This construction allows us to characterize…

Probability · Mathematics 2016-05-17 Bünyamin Kızıldemir , Nicolas Privault

Discrete statistical models supported on labelled event trees can be specified using so-called interpolating polynomials which are generalizations of generating functions. These admit a nested representation. A new algorithm exploits the…

Statistics Theory · Mathematics 2017-05-29 Christiane Görgen , Anna Bigatti , Eva Riccomagno , Jim Q. Smith

We study two different objects attached to an arbitrary quadrangulation of a regular polygon. The first one is a poset, closely related to the Stokes polytopes introduced by Baryshnikov. The second one is a set of some paths configurations…

Representation Theory · Mathematics 2015-05-25 Frédéric Chapoton

Given overlapping subsets of a set of taxa (e.g. species), and posterior distributions on phylogenetic tree topologies for each of these taxon sets, how can we infer a posterior distribution on phylogenetic tree topologies for the entire…

Populations and Evolution · Quantitative Biology 2021-04-23 Michael Karcher , Cheng Zhang , Frederick A Matsen

Graph polynomials encode fundamental combinatorial invariants of graphs. Their computation is investigated using tree and path decomposition frameworks, with formal definitions of treewidth, k-trees, and pathwidth establishing the…

Discrete Mathematics · Computer Science 2025-09-29 Mehul Bafna , Shaghik Amirian

We prove the kernel estimates related to subordinated semigroups on homogeneous trees. We study the long time propagation problem. We exploit this to show exit time estimates for (large) balls. We use an abstract setting of metric measure…

Probability · Mathematics 2007-05-23 Andrzej Stos

We give closed form expressions for the numbers of multi-rooted plane trees with specified degrees of root vertices. This results in an infinite number of integer sequences some of which are known to have an alternative interpretation. We…

Combinatorics · Mathematics 2024-02-06 Anwar Al Ghabra , K. Gopala Krishna , Patrick Labelle , Vasilisa Shramchenko

This paper provides an exploration of parking functions, a classical combinatorial object. We present two viewpoints on their structure and properties: through poset of noncrossing partitions and polytopes.

History and Overview · Mathematics 2024-12-17 Yan Liu