Related papers: Prefix reversals on binary and ternary strings
A permutation $\pi$ contains a permutation $\sigma$ as a pattern if it contains a subsequence of length $|\sigma|$ whose elements are in the same relative order as in the permutation $\sigma$. This notion plays a major role in enumerative…
In this work, we consider the burnt pancake problem, which is a well-studied problem going back to a work of Gates and Papadimitriou from 1979.The problem is to sort a stack of~$n$ one-sided burnt pancakes of different sizes, by a sequence…
Prefix normal words are binary words in which each prefix has at least the same number of $\so$s as any factor of the same length. Firstly introduced by Fici and Lipt\'ak in 2011, the problem of determining the index of the prefix…
In [4] we describe a variation of the classical permutation decoding algorithm that can be applied to any binary affine-invariant code; in particular, it can be applied to first-order Reed-Muller codes successfully. In this paper we study…
The cubic pancake graphs are Cayley graphs over the symmetric group $\mathrm{Sym}_n$ generated by three prefix reversals. There is the following open problem: characterize all the sets of three prefix reversals that generate…
We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…
There is a deep connection between permutations and trees. Certain sub-structures of permutations, called sub-permutations, bijectively map to sub-trees of binary increasing trees. This opens a powerful tool set to study enumerative and…
Frequently, randomly organized data is needed to avoid an anomalous operation of other algorithms and computational processes. An analogy is that a deck of cards is ordered within the pack, but before a game of poker or solitaire the deck…
The problem of string reconstruction from substring information has found many applications due to its relevance in DNA- and polymer-based data storage. One practically important and challenging paradigm requires reconstructing mixtures of…
We study the fundamental question of how efficiently suffix array entries can be accessed when the array cannot be stored explicitly. The suffix array $SA_T[1..n]$ of a text $T$ of length $n$ encodes the lexicographic order of its suffixes…
A wide range of applications, most notably in comparative genomics, involve the computation of a shortest sorting sequence of operations for a given permutation, where the set of allowed operations is fixed beforehand. Such sequences are…
It has been shown in the indexing literature that there is an essential difference between prefix/range searches on the one hand, and predecessor/rank searches on the other hand, in that the former provably allows faster query resolution.…
Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…
In binary jumbled pattern matching we wish to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of size $i$ and has exactly $j$ 1-bits. The problem naturally generalizes to…
We characterize those strings whose suffix arrays are based on arithmetic progressions, in particular, arithmetically progressed permutations where all pairs of successive entries of the permutation have the same difference modulo the…
This Paper defines and explores solution to the problem of \emph{Inversion of a finite Sequence} over the binary field, that of finding a prefix element of the sequence which confirms with a \emph{Recurrence Relation} (RR) rule defined by a…
We present a new recursive generation algorithm for prefix normal words. These are binary strings with the property that no substring has more 1s than the prefix of the same length. The new algorithm uses two operations on binary strings,…
We consider the quantum complexities of the following three problems: searching an ordered list, sorting an un-ordered list, and deciding whether the numbers in a list are all distinct. Letting N be the number of elements in the input list,…
Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…
We present a deterministic comparison-based algorithm that sorts sequences avoiding a fixed permutation $\pi$ in linear time, even if $\pi$ is a priori unkown. Moreover, the dependence of the multiplicative constant on the pattern $\pi$…