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We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…

Combinatorics · Mathematics 2007-05-23 Nicholas Eriksson

Let $I$ be an ideal of the polynomial ring $A[x]=A[x_1,...,x_n]$ over the commutative, noetherian ring $A$. Geometrically $I$ defines a family of affine schemes over $\Spec(A)$: For $\p\in\Spec(A)$, the fibre over $\p$ is the closed…

Commutative Algebra · Mathematics 2007-05-23 Michael Wibmer

This paper is concerned with linear algebra based methods for solving exactly polynomial systems through so-called Gr\"obner bases, which allow one to compute modulo the polynomial ideal generated by the input equations. This is a topical…

Symbolic Computation · Computer Science 2023-07-28 Jérémy Berthomieu , Christian Eder , Mohab Safey El Din

We introduce the theory of monoidal Groebner bases, a concept which generalizes the familiar notion in a polynomial ring and allows for a description of Groebner bases of ideals that are stable under the action of a monoid. The main…

Commutative Algebra · Mathematics 2011-08-25 Christopher J. Hillar , Seth Sullivant

Standard noncommutative Gr\"obner basis procedures are used for computing ideals of free noncommutative polynomial rings over fields. This paper describes Gr\"obner basis procedures for one-sided ideals in finitely presented noncommutative…

Rings and Algebras · Mathematics 2007-05-23 Anne Heyworth

An ideal of a local polynomial ring can be described by calculating a standard basis with respect to a local monomial ordering. However standard basis algorithms are not numerically stable. Instead we can describe the ideal numerically by…

Algebraic Geometry · Mathematics 2012-11-22 Robert Krone

Let $I = ( f_1, \dots, f_n )$ be a homogeneous ideal in the polynomial ring $K[x_1, \dots,x_n]$ over a field $K$ generated by generic polynomials. Using an incremental approach based on a method by Gao, Guan and Volny, and properties of the…

Commutative Algebra · Mathematics 2017-12-11 Juliane Capaverde , Shuhong Gao

The brain processes information about the environment via neural codes. The neural ideal was introduced recently as an algebraic object that can be used to better understand the combinatorial structure of neural codes. Every neural ideal…

Neurons and Cognition · Quantitative Biology 2018-04-24 Rebecca Garcia , Luis David García Puente , Ryan Kruse , Jessica Liu , Dane Miyata , Ethan Petersen , Kaitlyn Phillipson , Anne Shiu

Two correspondences have been provided that associate any linear code over a finite field with a binomial ideal. In this paper, algorithms for computing their Graver bases and universal Gr\"obner bases are given. To this end, a connection…

Commutative Algebra · Mathematics 2014-05-08 Natalia Dück , Karl-Heinz Zimmermann

We study an inductive method of computing initial ideals and Gr\"obner bases for families of ideals in a polynomial ring. This method starts from a given set of pairs $(I,J)$ where $I$ is any ideal and $J$ is a monomial ideal contained in…

Commutative Algebra · Mathematics 2026-01-28 Eric Marberg , Brendan Pawlowski

In this note, we show that the decomposition group $Dec(I)$ of a zero-dimensional radical ideal $I$ in ${\bf K}[x_1,\ldots,x_n]$ can be represented as the direct sum of several symmetric groups of polynomials based upon using Gr\"{o}bner…

Commutative Algebra · Mathematics 2016-01-26 Yongbin Li

Learning the unknown causal parameters of a linear structural causal model is a fundamental task in causal analysis. The task, known as the problem of identification, asks to estimate the parameters of the model from a combination of…

Artificial Intelligence · Computer Science 2024-07-18 Julian Dörfler , Benito van der Zander , Markus Bläser , Maciej Liskiewicz

A new efficient algorithm is proposed for factoring polynomials over an algebraic extension field. The extension field is defined by a polynomial ring modulo a maximal ideal. If the maximal ideal is given by its Groebner basis, no extra…

Symbolic Computation · Computer Science 2010-10-04 Yao Sun , Dingkang Wang

We present a new open source C library \texttt{msolve} dedicated to solving multivariate polynomial systems of dimension zero through computer algebra methods. The core algorithmic framework of \texttt{msolve} relies on Gr\''obner bases and…

Symbolic Computation · Computer Science 2021-05-20 Jérémy Berthomieu , Christian Eder , Mohab Safey El Din

We study existence and computability of finite bases for ideals of polynomials over infinitely many variables. In our setting, variables come from a countable logical structure A, and embeddings from A to A act on polynomials by renaming…

Logic in Computer Science · Computer Science 2026-05-21 Arka Ghosh , Sławomir Lasota

In classical invariant theory, the Gr\"obner base of the ideal of syzygies and the normal forms of polynomials of invariants are two core contents. To improve the performance of invariant theory in symbolic computing of classical geometry,…

Symbolic Computation · Computer Science 2013-03-01 Hongbo Li

Computation biology helps to understand all processes in organisms from interaction of molecules to complex functions of whole organs. Therefore, there is a need for mathematical methods and models that deliver logical explanations in a…

Molecular Networks · Quantitative Biology 2018-10-10 Ines Abdeljaoued-Tej , Alia BenKahla , Ghassen Haddad , Annick Valibouze

We compute the Groebner basis of a system of polynomial equations related to the Jacobian conjecture, and describe completely the solution set.

Algebraic Geometry · Mathematics 2025-06-09 Valeria Ramirez , Christian Valqui

This diploma thesis is concerned with functional decomposition $f = g \circ h$ of polynomials. First an algorithm is described which computes decompositions in polynomial time. This algorithm was originally proposed by Zippel (1991). A…

Commutative Algebra · Mathematics 2011-07-05 Raoul Blankertz

In this paper, we suggest a new efficient algorithm in order to compute S-polynomial reduction rapidly in the known algorithm for computing Grobner bases, and compare the complexity with others.

Symbolic Computation · Computer Science 2015-07-14 Yong-Jin Kim , Hyon-Song Paek , Nam-Chol Kim , Chong-Il Byon
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