Related papers: On phylogenetic trees - a geometer's view
We prove that the Fano variety of lines of a generic cubic fourfold containing a plane is isomorphic to a moduli space of twisted stable complexes on a K3 surface. On the other hand, we show that the Fano varieties are always birational to…
We compute, with Symplectic Field Theory techniques, the Gromov-Witten theory of the complex projective line with orbifold points. A natural subclass of these orbifolds, the ones with polynomial quantum cohomology, gives rise to a family of…
In this paper we provide sufficient conditions for maps of vector bundles on smooth projective varieties to be uniquely determined by their degeneracy schemes. We then specialize to holomorphic distributions and foliations. In particular,…
Evolutionary relationships between species are represented by phylogenetic trees, but these relationships are subject to uncertainty due to the random nature of evolution. A geometry for the space of phylogenetic trees is necessary in order…
We introduce new methods for phylogenetic tree quartet construction by using machine learning to optimize the power of phylogenetic invariants. Phylogenetic invariants are polynomials in the joint probabilities which vanish under a model of…
The metric space of phylogenetic trees defined by Billera, Holmes, and Vogtmann, which we refer to as BHV space, provides a natural geometric setting for describing collections of trees on the same set of taxa. However, it is sometimes…
Bertini classified the birational involutions of the complex projective plane, but his geometric approach does not allow to explicit these maps easily. In this article, we present an effective approach to this problem by associating to each…
We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…
Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally challenging. Classical approaches to characterizing tree…
This is a report on some of the main developments in birational geometry in the last few years focusing on the minimal model program, Fano varieties, singularities and related topics, in characteristic zero.
In 1991 Campana and Peternell proposed, as a natural algebro-geometric extension of Mori's characterization of the projective space, the problem of classifying the complex projective Fano manifolds whose tangent bundle is nef, conjecturing…
To every tree we associate a filtered cochain complex. Its cohomology and the corresponding spectral sequence have clear combinatorial description. If a tree is the Dynkin diagram of a simple plane curve singularity, the graded Euler…
We compute the Hochschild-Kostant-Rosenberg decomposition of the Hochschild cohomology of Fano 3-folds. This is the first step in understanding the non-trivial Gerstenhaber algebra structure, and yields some initial insights in the…
We study the spaces of rational curves on Fano threefolds with Gorenstein terminal singularities. We generalize the results regarding Geometric Manin's Conjecture for smooth Fano threefolds, including the classification of subvarieties with…
We obtain a combinatorial description of Gorenstein spherical Fano varieties in terms of certain polytopes, generalizing the combinatorial description of Gorenstein toric Fano varieties by reflexive polytopes and its extension to Gorenstein…
We introduce a variety $\hat{G}_2$ parameterizing isotropic five-spaces of a general degenerate four-form in a seven dimensional vector space. It is in a natural way a degeneration of the variety $G_2$, the adjoint variety of the simple Lie…
A reflexive polytope, respectively its associated Gorenstein toric Fano variety, is called pseudo-symmetric, if the polytope has a centrally symmetric pair of facets. Here we present a complete classification of pseudo-symmetric simplicial…
We show that the projection morphism $X^{[3,4]} \lra X^{[3]}$ is flat even if it has reducible fiber. After analyzing blow-up constructions related to $X^{[3,4]}$, we conclude that $X^{[3,4]}$ has canonical Gorenstein singularities. As a…
We list combinatorial criteria of some singularities, which appear in the Minimal Model Program or in the study of (singular) Fano varieties, for spherical varieties. Most of the results of this paper are already known or are quite easy…
We propose a study of the foliations of the projective plane induced by simple derivations of the polynomial ring in two indeterminates over the complex field. These correspond to foliations which have no invariant algebraic curve nor…