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We investigate the application of hierarchical classification schemes to the annotation of gene function based on several characteristics of protein sequences including phylogenic descriptors, sequence based attributes, and predicted…

Genomics · Quantitative Biology 2007-05-23 Babak Shahbaba , Radford M. Neal

Multi-level Hierarchical Classification (MLHC) tackles the challenge of categorizing items within a complex, multi-layered class structure. However, traditional MLHC classifiers often rely on a backbone model with independent output layers,…

Artificial Intelligence · Computer Science 2025-01-14 Shijing Chen , Mohamed Reda Bouadjenek , Shoaib Jameel , Usman Naseem , Basem Suleiman , Flora D. Salim , Hakim Hacid , Imran Razzak

Neural networks utilize the softmax as a building block in classification tasks, which contains an overconfidence problem and lacks an uncertainty representation ability. As a Bayesian alternative to the softmax, we consider a random…

Machine Learning · Computer Science 2020-06-30 Taejong Joo , Uijung Chung , Min-Gwan Seo

We present a method to integrate Large Language Models (LLMs) and traditional tabular data classification techniques, addressing LLMs challenges like data serialization sensitivity and biases. We introduce two strategies utilizing LLMs for…

Machine Learning · Computer Science 2023-11-21 Max Zhu , Siniša Stanivuk , Andrija Petrovic , Mladen Nikolic , Pietro Lio

Complex Networks are a good approach to find internal relationships and represent the structure of classes in a dataset then they are used for High Level Classification. Previous works use K-Nearest Neighbors to build each Complex Network…

Machine Learning · Computer Science 2021-10-26 Josimar Chire

Many classification problems consider classes that form a hierarchy. Classifiers that are aware of this hierarchy may be able to make confident predictions at a coarse level despite being uncertain at the fine-grained level. While it is…

Machine Learning · Computer Science 2023-02-13 Jack Valmadre

Most classification models treat all misclassifications equally. However, different classes may be related, and these hierarchical relationships must be considered in some classification problems. These problems can be addressed by using…

Machine Learning · Computer Science 2023-01-27 Hyeongji Kim , Pekka Parviainen , Terje Berge , Ketil Malde

School choice mechanism designers use discrete choice models to understand and predict families' preferences. The most widely-used choice model, the multinomial logit (MNL), is linear in school and/or household attributes. While the model…

Applications · Statistics 2023-06-06 Amel Awadelkarim , Arjun Seshadri , Itai Ashlagi , Irene Lo , Johan Ugander

Bayesian network classifiers (BNCs) possess a number of properties desirable for a modern classifier: They are easily interpretable, highly scalable, and offer adaptable complexity. However, traditional methods for learning BNCs have…

Machine Learning · Computer Science 2025-05-30 Connor Cooper , Geoffrey I. Webb , Daniel F. Schmidt

In many large-scale classification problems, classes are organized in a known hierarchy, typically represented as a tree expressing the inclusion of classes in superclasses. We introduce a loss for this type of supervised hierarchical…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Nicolas Urbani , Sylvain Rousseau , Yves Grandvalet , Leonardo Tanzi

In applications where categorical labels follow a natural hierarchy, classification methods that exploit the label structure often outperform those that do not. Un-fortunately, the majority of classification datasets do not come…

We introduce a new nonlinear model for classification, in which we model the joint distribution of response variable, y, and covariates, x, non-parametrically using Dirichlet process mixtures. We keep the relationship between y and x linear…

Statistics Theory · Mathematics 2007-05-23 Babak Shahbaba , Radford M. Neal

Classification is a fundamental task in machine learning. While conventional methods-such as binary, multiclass, and multi-label classification-are effective for simpler problems, they may not adequately address the complexities of some…

This study introduces the Misclassification Likelihood Matrix (MLM) as a novel tool for quantifying the reliability of neural network predictions under distribution shifts. The MLM is obtained by leveraging softmax outputs and clustering…

In this paper, we investigate the effectiveness of integrating a hierarchical taxonomy of labels as prior knowledge into the learning algorithm of a flat classifier. We introduce two methods to integrate the hierarchical taxonomy as an…

Machine Learning · Computer Science 2023-05-29 Mohsen Pourvali , Yao Meng , Chen Sheng , Yangzhou Du

Deep networks are currently the state-of-the-art for sensory perception in autonomous driving and robotics. However, deep models often generate overconfident predictions precluding proper probabilistic interpretation which we argue is due…

Machine Learning · Computer Science 2020-08-25 G. Melotti , C. Premebida , J. J. Bird , D. R. Faria , N. Gonçalves

Binary logit (BNL) and multinomial logit (MNL) models are the two most widely used discrete choice models for travel behavior modeling and prediction. However, in many scenarios, the collected data for those models are subject to…

Optimization and Control · Mathematics 2025-06-02 Baichuan Mo , Yunhan Zheng , Xiaotong Guo , Ruoyun Ma , Jinhua Zhao

This paper presents a framework in which hierarchical softmax is used to create a global hierarchical classifier. The approach is applicable for any classification task where there is a natural hierarchy among classes. We show empirical…

Machine Learning · Statistics 2023-08-03 Jetze Schuurmans , Flavius Frasincar

Class probabilities predicted by most multiclass classifiers are uncalibrated, often tending towards over-confidence. With neural networks, calibration can be improved by temperature scaling, a method to learn a single corrective…

Machine Learning · Computer Science 2019-10-29 Meelis Kull , Miquel Perello-Nieto , Markus Kängsepp , Telmo Silva Filho , Hao Song , Peter Flach

Existing multi-label ranking (MLR) frameworks only exploit information deduced from the bipartition of labels into positive and negative sets. Therefore, they do not benefit from ranking among positive labels, which is the novel MLR…

Machine Learning · Computer Science 2025-09-12 V. Bugra Yesilkaynak , Emine Dari , Alican Mertan , Gozde Unal
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