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We present a new theory which describes the collection of all tunnels of tunnel number 1 knots in the 3-sphere (up to orientation-preserving equivalence in the sense of Heegaard splittings) using the disk complex of the genus-2 handlebody…
The fusion number of a ribbon knot is the minimal number of 1-handles needed to construct a ribbon disk. The strong homotopy fusion number of a ribbon knot is the minimal number of 2-handles in a handle decomposition of a ribbon disk…
Construction of a semigroup with 15 generators and 84 relations is given. The center of this semigroup is in one-to-one correspondence with the set of all isotopy classes of non-oriented singular knots (links with finitely many double…
The topological effects on the thermal properties of several knot configurations are investigated using Monte Carlo simulations. In order to check if the topology of the knots is preserved during the thermal fluctuations we propose a method…
A coarse-grained computational model is used to investigate how the bending rigidity of a polymer under tension affects the formation of a trefoil knot. Thermodynamic integration techniques are applied to demonstrate that the free-energy…
Data describing the three-dimensional structure of physical networks is increasingly available, leading to a surge of interest in network science to explore the relationship between the shape and connectivity of physical networks. We…
The interplay between the topological and geometrical properties of a polymer ring can be clarified by establishing the entanglement trapped in any portion (arc) of the ring. The task requires to close the open arcs into a ring, and the…
We apply results from both contact topology and exceptional surgery theory to study when Legendrian surgery on a knot yields a reducible manifold. As an application, we show that a reducible surgery on a non-cabled positive knot of genus g…
The stick number of a knot is the minimum number of segments needed to build a polygonal version of the knot. Despite its elementary definition and relevance to physical knots, the stick number is poorly understood: for most knots we only…
This is the second of three papers that refine and extend portions of our earlier preprint, "The depth of a knot tunnel." Together, they rework the entire preprint. The theory of tunnel number 1 knots that we introduced in "The tree of knot…
We investigate the coupling between individual tubes in a rope of single-wall carbon nanotubes using four probe resistance measurements. By introducing defects through the controlled sputtering of the rope we generate a strong non-monotonic…
Fix a straight line L in Euclidean 3-space and consider the fibration of the complement of L by half-planes. A generic knot K in the complement of L has neither fiber quadrisecants nor fiber extreme secants such that K touches the…
A simple analytical way of creating superpositions of Bessel-Gaussian light beams with knotted nodal lines is proposed. It is based on the equivalence between the paraxial wave equation and the two-dimensional Schr\"odinger equation for a…
Recent studies classify the topology of proteins by analysing the distribution of their projections using knotoids. The approximation of this distribution depends on the number of projection directions that are sampled. Here we investigate…
Using Kauffman's model of flat knotted ribbons, we demonstrate how all regular polygons of at least seven sides can be realised by ribbon constructions of torus knots. We calculate length to width ratios for these constructions thereby…
In this paper the number and lengths of minimal length lattice knots confined to slabs of width $L$, is determined. Our data on minimal length verify the results by Sharein et.al. (2011) for the similar problem, expect in a single case,…
The art of tying knots is exploited in nature and occurs in multiple applications ranging from being an essential part of scouting programs to engineering molecular knots. Biomolecular knots, such as knotted proteins, bear various cellular…
This is the third of three papers that refine and extend portions of our earlier preprint, "The depth of a knot tunnel." Together, they rework the entire preprint. In this paper, we use the theory of tunnel number 1 knots that we introduced…
The maximum length of the shortest path from a leaf to the root of a skein tree for knots and links gives a measure of the complexity of computing link polynomials by the skein relation (the Jones polynomial, the Alexander-Conway…
A knot is a closed loop in space without self-intersection. Two knots are equivalent if there is a self homeomorphism of space bringing one onto the other. An arc presentation is an embedding of a knot in the union of finitely many half…