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Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…

Populations and Evolution · Quantitative Biology 2015-01-30 Stephen J. Willson

In this paper we continue the study of permutations avoiding the vincular pattern $1-32-4$ by constructing a generating tree with a single label for these permutations. This construction finally provides a clearer explanation of why a…

Combinatorics · Mathematics 2021-03-02 Matteo Cervetti

A generalized Davenport-Schinzel sequence is one over a finite alphabet that contains no subsequences isomorphic to a fixed forbidden subsequence. One of the fundamental problems in this area is bounding (asymptotically) the maximum length…

Discrete Mathematics · Computer Science 2007-07-13 Seth Pettie

We introduce the notions of $\tau$-exceptional and signed $\tau$-exceptional sequences for any finite dimensional algebra. We prove that for a fixed algebra of rank $n$, and for any positive integer $t \leq n$, there is a bijection between…

Representation Theory · Mathematics 2021-06-04 Aslak Bakke Buan , Bethany Marsh

We present a new approach to the problem of enumerating permutations of length n that avoid a fixed consecutive pattern of length m. We use this idea to give explicit upper and lower bounds on the number of permutations avoiding a pattern…

Combinatorics · Mathematics 2012-08-29 Guillem Perarnau

We consider uniform random permutations in proper substitution-closed classes and study their limiting behavior in the sense of permutons. The limit depends on the generating series of the simple permutations in the class. Under a mild…

Recently, Babson and Steingrimsson (see \cite{BS}) introduced generalized permutations patterns that allow the requirement that two adjacent letters in a pattern must be adjacent in the permutation. In this paper we study the generating…

Combinatorics · Mathematics 2007-05-23 T. Mansour

Recently, Babson and Steingrimsson have introduced generalised permutation patterns that allow the requirement that two adjacent letters in a pattern must be adjacent in the permutation. We consider pattern avoidance for such patterns, and…

Combinatorics · Mathematics 2007-05-23 Anders Claesson

We look at a family of meta-Fibonacci sequences which arise in studying the number of leaves at the largest level in certain infinite sequences of binary trees, restricted compositions of an integer, and binary compact codes. For this…

Combinatorics · Mathematics 2007-05-23 Brad Jackson , Frank Ruskey

The number of 123-avoiding permutation on $\{1,2,\ldots,n\}$ with a fixed leading terms is counted by the ballot numbers. The same holds for $132$-avoiding permutations. These results were proved by Miner and Pak using the…

Combinatorics · Mathematics 2026-02-24 Ömer Eğecioğlu , Collier Gaiser , Mei Yin

Motivated by a correlation between the distribution of descents over permutations that avoid a consecutive pattern and those avoiding the respective quasi-consecutive pattern, as established in this paper, we obtain a complete $\des$-Wilf…

Combinatorics · Mathematics 2025-02-17 Yan Wang , Qi Fang , Shishuo Fu , Sergey Kitaev , Haijun Li

Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…

Populations and Evolution · Quantitative Biology 2018-09-05 Joan Carles Pons , Charles Semple , Mike Steel

The enumeration of inversion sequences avoiding a single pattern was initiated by Corteel--Martinez--Savage--Weselcouch and Mansour--Shattuck independently. Their work has sparked various investigations of generalized patterns in inversion…

Combinatorics · Mathematics 2023-06-22 Chunyan Yan , Zhicong Lin

We introduce a permutation analogue of the celebrated Szemeredi Regularity Lemma, and derive a number of consequences. This tool allows us to provide a structural description of permutations which avoid a specified pattern, a result that…

Combinatorics · Mathematics 2007-05-23 Joshua N. Cooper

For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…

Combinatorics · Mathematics 2022-03-22 Heesung Shin , Jiang Zeng

The classes of tree permutations and forest permutations were defined by Acan and Hitczenko (2016). We study random permutations of a given length from these classes, and in particular the number of occurrences of a fixed pattern in one of…

Combinatorics · Mathematics 2022-03-10 Svante Janson

Previous work has shown that the disarray (or displacement) of an (affine) (signed) permutation is bounded in terms of its Coxeter length. Here, we characterize the permutations for which the bound is sharp in two ways: in terms of a…

Combinatorics · Mathematics 2024-04-10 Joel Brewster Lewis , Bridget Eileen Tenner

Given a connected non-negative unit form we construct an extended affine Lie algebra by giving a Chevalley basis for it. We also obtain this algebra as a quotient of an algebra defined by means of generalized Serre relations by M. Barot, D.…

Representation Theory · Mathematics 2017-06-15 Gustavo Jasso

In this article, Temperley's bijection between spanning trees of the square grid on the one hand, and perfect matchings (also known as dimer coverings) of the square grid on the other, is extended to the setting of general planar directed…

Combinatorics · Mathematics 2007-05-23 Richard W. Kenyon , James G. Propp , David B. Wilson

It is shown that a group defined by forbidding all patterns of size s+1 that do not appear in a given self-similar group of tree automorphisms is the topological closure of a self-similar, countable, regular branch group, branching over its…

Group Theory · Mathematics 2010-12-10 Zoran Sunic