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Probabilistic graphical models (PGMs) have become a popular tool for computational analysis of biological data in a variety of domains. But, what exactly are they and how do they work? How can we use PGMs to discover patterns that are…

Quantitative Methods · Quantitative Biology 2010-02-22 Edoardo M Airoldi

Graph sampling is a technique to pick a subset of vertices and/ or edges from original graph. It has a wide spectrum of applications, e.g. survey hidden population in sociology [54], visualize social graph [29], scale down Internet AS graph…

Social and Information Networks · Computer Science 2013-08-28 Pili Hu , Wing Cheong Lau

We introduce the idea of temporal graphs, a representation that encodes temporal data into graphs while fully retaining the temporal information of the original data. This representation lets us explore the dynamic temporal properties of…

Physics and Society · Physics 2013-06-06 Vassilis Kostakos

Randomness is a crucial resource for a broad range of important applications, such as Monte Carlo simulation and computation, generative artificial intelligence and cryptography. But what is randomness? A widely accepted definition has…

Quantum Physics · Physics 2024-10-01 Mario Stipčević

We construct explicit families of graphs whose eigenvalues are asymptotically distributed according to Wigner's semicircle law; in other words, that are spectrally indistinguishable from random graphs. However, in other respects they are…

Combinatorics · Mathematics 2025-11-27 Arthur Forey , Javier Fresán , Emmanuel Kowalski , Yuval Wigderson

We investigate graph representation learning approaches that enable models to generalize across graphs: given a model trained using the representations from one graph, our goal is to apply inference using those same model parameters when…

Machine Learning · Computer Science 2023-02-20 Anton Amirov , Chris Quirk , Jennifer Neville

\emph{Uncertain Graph} (also known as \emph{Probabilistic Graph}) is a generic model to represent many real\mbox{-}world networks from social to biological. In recent times analysis and mining of uncertain graphs have drawn significant…

Databases · Computer Science 2021-06-16 Suman Banerjee

Graphs are a powerful data structure to represent relational data and are widely used to describe complex real-world data structures. Probabilistic Graphical Models (PGMs) have been well-developed in the past years to mathematically model…

Artificial Intelligence · Computer Science 2023-01-31 Chenqing Hua , Sitao Luan , Qian Zhang , Jie Fu

The semi-random graph process is a single-player game that begins with an empty graph on $n$ vertices. In each round, a vertex $u$ is presented to the player independently and uniformly at random. The player then adaptively selects a vertex…

Combinatorics · Mathematics 2024-03-05 Natalie C. Behague , Trent G. Marbach , Pawel Pralat , Andrzej Rucinski

A pseudoline arrangement graph is a planar graph induced by an embedding of a (simple) pseudoline arrangement. We study the corresponding graph realization problem and properties of pseudoline arrangement graphs. In the first part, we give…

Combinatorics · Mathematics 2021-03-04 Sandip Das , Siddani Bhaskara Rao , Uma kant Sahoo

We investigate topological, combinatorial, statistical, and enumeration properties of finite graphs with high Kolmogorov complexity (almost all graphs) using the novel incompressibility method. Example results are: (i) the mean and variance…

Combinatorics · Mathematics 2007-05-23 Harry Buhrman , Ming Li , John Tromp , Paul Vitanyi

Isoradial graphs are a natural generalization of regular graphs which give, for many models of statistical mechanics, the right framework for studying models at criticality. In this survey paper, we first explain how isoradial graphs…

Probability · Mathematics 2010-12-16 Cédric Boutillier , Béatrice De Tilière

Retrieving cohesive subgraphs in networks is a fundamental problem in social network analysis and graph data management. These subgraphs can be used for marketing strategies or recommendation systems. Despite the introduction of numerous…

Social and Information Networks · Computer Science 2025-07-16 Dahee Kim , Song Kim , Jeongseon Kim , Junghoon Kim , Kaiyu Feng , Sungsu Lim , Jungeun Kim

This paper has dual aims. First is to develop practical universal coding methods for unlabeled graphs. Second is to use these for graph anomaly detection. The paper develops two coding methods for unlabeled graphs: one based on the degree…

Information Theory · Computer Science 2018-04-10 Anders Host-Madsen , June Zhang

Graphical models can represent a multivariate distribution in a convenient and accessible form as a graph. Causal models can be viewed as a special class of graphical models that not only represent the distribution of the observed system…

Methodology · Statistics 2017-06-29 Christina Heinze-Deml , Marloes H. Maathuis , Nicolai Meinshausen

In this paper we relate a fundamental parameter of a random graph, its degree sequence, to a simple model of nearly independent binomial random variables. This confirms a conjecture made in 1997. As a result, many interesting functions of…

Combinatorics · Mathematics 2019-08-27 Anita Liebenau , Nick Wormald

Asymptotic properties of random regular graphs are object of extensive study in mathematics. In this note we argue, based on theory of spin glasses, that in random regular graphs the maximum cut size asymptotically equals the number of…

Disordered Systems and Neural Networks · Physics 2010-02-25 Lenka Zdeborová , Stefan Boettcher

For real application and theoretical investigation of ordinary hypergraphs and non-ordinary hypergraphs, researchers need to establish standard rules and feasible operating methods. We propose a visualization tool for investigating…

History and Overview · Mathematics 2025-03-27 Fei Ma , Bing Yao

We propose a new approach to text semantic analysis and general corpus analysis using, as termed in this article, a "bi-gram graph" representation of a corpus. The different attributes derived from graph theory are measured and analyzed as…

Machine Learning · Computer Science 2021-07-30 Thomas Konstantinovsky , Matan Mizrachi

An important question in statistical network analysis is how to estimate models of discrete and dependent network data with intractable likelihood functions, without sacrificing computational scalability and statistical guarantees. We…

Statistics Theory · Mathematics 2026-03-06 Jonathan R. Stewart , Michael Schweinberger