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Extreme mutation rates in microbes and cancer cells can result in error-induced extinction (EEX), where every descendant cell eventually acquires a lethal mutation. In this work, we investigate critical birth-death processes with $n$…

Populations and Evolution · Quantitative Biology 2024-07-08 Meritxell Brunet Guasch , P. L. Krapivsky , Tibor Antal

Multispecies ecosystems modelled by generalized Lotka-Volterra equations exhibit stationary population abundances, where large number of species often coexist. Understanding the precise conditions under which this is at all feasible and…

Populations and Evolution · Quantitative Biology 2026-05-19 Philippe Jacquod

In this work we construct individual-based models that give rise to the generalized logistic model at the mean-field deterministic level and that allow us to interpret the parameters of these models in terms of individual interactions. We…

Populations and Evolution · Quantitative Biology 2017-09-13 Vicenc Mendez , Michael Assaf , Werner Horsthemke , Daniel Campos

The extinction of species is a major problem of concern with a large literature. Our investigation gives insight into when species extinctions must occur, with an emphasis on determining which species might possibly die out and on how fast…

Dynamical Systems · Mathematics 2023-05-10 Naghmeh Akhavan , James A. Yorke

We study the evolution of gene frequencies in a population living in $\mathbb{R}^d$, modelled by the spatial Lambda Fleming-Viot process with natural selection (Barton, Etheridge and Veber, 2010 and Etheridge, Veber and Yu, 2014). We…

Probability · Mathematics 2022-10-04 Raphaël Forien , Sarah Penington

We develop a theory of first passage processes in stochastic non-equilibrium systems of birth-death type using two closely related epidemiological models as examples. Our method employs the probability generating function technique in…

Statistical Mechanics · Physics 2014-08-06 Alex Kamenev , Baruch Meerson

We consider a class of continuous-time stochastic growth models on $d$-dimensional lattice with non-negative real numbers as possible values per site. The class contains examples such as binary contact path process and potlatch process. We…

Probability · Mathematics 2009-07-27 Yukio Nagahata , Nobuo Yoshida

Many species live in colonies that thrive for a while and then collapse. Upon collapse very few individuals survive. The survivors start new colonies at other sites that thrive until they collapse, and so on. We introduce spatial and…

Probability · Mathematics 2019-03-05 Fábio Prates Machado , Alejandro Roldán-Correa , Rinaldo B. Schinazi

We consider a continuous-time symmetric branching random walk on the $d$-dimensional lattice, $d\ge 1$, and assume that at the initial moment there is one particle at every lattice point. Moreover, we assume that the underlying random walk…

Probability · Mathematics 2019-03-07 Daria Balashova , Stanislav Molchanov , Elena Yarovaya

In the long run, the eventual extinction of any biological population is an inevitable outcome. While extensive research has focused on the average time it takes for a population to go extinct under various circumstances, there has been…

Populations and Evolution · Quantitative Biology 2023-07-18 David Kessler , Nadav M. Shnerb

Many biological systems exhibit multiscale dynamics, where some species occur in high copy numbers while others remain rare. This heterogeneity necessitates hybrid modelling approaches: deterministic models are computationally efficient but…

Populations and Evolution · Quantitative Biology 2026-01-21 Tom Kimpson , Domenic P. J. Germano , Jennifer A. Flegg , Mark B. Flegg

Chase-Escape is a simple stochastic model that describes a predator-prey interaction. In this model, there are two types of particles, red and blue. Red particles colonize adjacent empty sites at an exponential rate $\lambda_{R}$, whereas…

Disordered Systems and Neural Networks · Physics 2018-07-24 Si Tang , George Kordzakhia , Steven P. Lalley

The statistical properties of an ecosystem composed of species interacting via pairwise, random interactions and deterministic, concentration limiting self-interaction are studied analytically with tools of equilibrium statistical mechanics…

Disordered Systems and Neural Networks · Physics 2009-11-07 Viviane M. de Oliveira , J. F. Fontanari

A class of models for large-scale evolution and mass extinctions is presented. These models incorporate environmental changes on all scales, from influences on a single species to global effects. This is a step towards a unified picture of…

adap-org · Physics 2007-05-23 C. Wilke , S. Altmeyer , T. Martinetz

Stochastic discrete-time SIS and SIR models of endemic diseases are introduced and analyzed. For the deterministic, mean-field model, the basic reproductive number $R_0$ determines their global dynamics. If $R_0\le 1$, then the frequency of…

Populations and Evolution · Quantitative Biology 2020-05-19 Sebastian J. Schreiber , Shuo Huang , Jifa Jiang , Hao Wang

We study a lattice model of a multi-species prey-predator system. Numerical results show that for a small mutation rate the model develops irregular long-period oscillatory behavior with sizeable changes in a number of species. The…

Other Condensed Matter · Physics 2009-11-10 Adam Lipowski

We study the interplay between synchronization and extinction of a species. Using a general model we show that under a common external forcing, the species with a quadratic saturation term in the population dynamics first undergoes spatial…

Chaotic Dynamics · Physics 2009-11-11 R. E. Amritkar , Govindan Rangarajan

We consider a stochastic model for a pathogen population in the presence of an immune response, in which pathogen types are partially ordered by ancestry and the immune system must eliminate ancestor types before it can eliminate their…

Probability · Mathematics 2026-02-03 Carolina Grejo , Fabio Lopes , Fábio Machado , Alejandro Roldán-Correa

We consider branching random walks in $d$-dimensional integer lattice with time-space i.i.d. offspring distributions. This model is known to exhibit a phase transition: If $d \ge 3$ and the environment is "not too random", then, the total…

Probability · Mathematics 2007-12-06 Yueyun Hu , Nobuo Yoshida

We analyse a stochastic SIS epidemic amongst a finite population partitioned into households. Since the population is finite, the epidemic will eventually go extinct, i.e., have no more infectives in the population. We study the effects of…

Populations and Evolution · Quantitative Biology 2009-08-05 Tom Britton , Peter Neal