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Graph-structured data arise in many scenarios. A fundamental problem is to quantify the similarities of graphs for tasks such as classification. R-convolution graph kernels are positive-semidefinite functions that decompose graphs into…

Machine Learning · Computer Science 2022-01-25 Wei Ye , Omid Askarisichani , Alex Jones , Ambuj Singh

Deep generative models for graphs have exhibited promising performance in ever-increasing domains such as design of molecules (i.e, graph of atoms) and structure prediction of proteins (i.e., graph of amino acids). Existing work typically…

Machine Learning · Computer Science 2021-01-21 Wenbin Zhang , Liming Zhang , Dieter Pfoser , Liang Zhao

A set $\mathcal{S}$ of derangements (fixed-point-free permutations) of a set $V$ generates a digraph with vertex set $V$ and arcs $(x,x^\sigma)$ for $x\in V$ and $\sigma\in\mathcal{S}$. We address the problem of characterising those…

Combinatorics · Mathematics 2020-08-31 Daniel Horsley , Moharram Iradmusa , Cheryl E. Praeger

In the present paper, we study algorithmic questions for the arc-intersection graph of directed paths on a tree. Such graphs are known to be perfect (proved by Monma and Wei in 1986). We present faster algorithms than all previously known…

Discrete Mathematics · Computer Science 2009-02-10 Olivier Durand de Gévigney , Frédéric Meunier , Christian Popa , Julien Reygner , Ayrin Romero

We study the kernel complexity of constraint satisfaction problems over a finite domain, parameterized by the number of variables, whose constraint language consists of two relations: the non-equality relation and an additional…

Computational Complexity · Computer Science 2026-04-24 Ishay Haviv

Generative models for source code are an interesting structured prediction problem, requiring to reason about both hard syntactic and semantic constraints as well as about natural, likely programs. We present a novel model for this problem…

Machine Learning · Computer Science 2019-04-18 Marc Brockschmidt , Miltiadis Allamanis , Alexander L. Gaunt , Oleksandr Polozov

A digraph such that every proper induced subdigraph has a kernel is said to be \emph{kernel perfect} (KP for short) (\emph{critical kernel imperfect} (CKI for short) resp.) if the digraph has a kernel (does not have a kernel resp.). The…

Combinatorics · Mathematics 2023-06-22 H. Galeana-Sánchez , M. Olsen

We study Artin kernels, i.e. kernels of discrete characters of right-angled Artin groups, and we show that they decompose as graphs of groups in a way that can be explicitly computed from the underlying graph. When the underlying graph is…

Group Theory · Mathematics 2024-05-03 Danielle Barquinero , Lorenzo Ruffoni , Kaidi Ye

When engaging in end-to-end graph representation learning with Graph Neural Networks (GNNs), the intricate causal relationships and rules inherent in graph data pose a formidable challenge for the model in accurately capturing authentic…

Machine Learning · Computer Science 2024-06-14 Hang Gao , Peng Qiao , Yifan Jin , Fengge Wu , Jiangmeng Li , Changwen Zheng

Graph generative modelling has become an essential task due to the wide range of applications in chemistry, biology, social networks, and knowledge representation. In this work, we propose a novel framework for generating graphs by adapting…

Machine Learning · Statistics 2026-02-04 Anthony Stephenson , Ian Gallagher , Christopher Nemeth

We prove several claims made by Kontsevich about the orbifold Euler characteristic of the three types of graph homology introduced by him. For this purpose, first we develop a simplified version of the Feynman diagram method, which requires…

Quantum Algebra · Mathematics 2007-05-23 Ferenc Gerlits

Graph kernels have become an established and widely-used technique for solving classification tasks on graphs. This survey gives a comprehensive overview of techniques for kernel-based graph classification developed in the past 15 years. We…

Machine Learning · Computer Science 2020-02-05 Nils M. Kriege , Fredrik D. Johansson , Christopher Morris

In this paper, we show that a simple coloring scheme can improve, both theoretically and empirically, the expressive power of Message Passing Neural Networks(MPNNs). More specifically, we introduce a graph neural network called Colored…

Machine Learning · Computer Science 2019-12-13 George Dasoulas , Ludovic Dos Santos , Kevin Scaman , Aladin Virmaux

Graph neural networks (GNN) are very popular methods in machine learning and have been applied very successfully to the prediction of the properties of molecules and materials. First-order GNNs are well known to be incomplete, i.e., there…

Machine Learning · Statistics 2022-11-08 Sergey N. Pozdnyakov , Michele Ceriotti

In a recent article a generalization of the binomial distribution associated with a sequence of positive numbers was examined. The analysis of the nonnegativeness of the formal expressions was a key-point to allow to give them a statistical…

Mathematical Physics · Physics 2015-06-04 H. Bergeron , E. M. F. Curado , J. P. Gazeau , Ligia M. C. S. Rodrigues

The theory of graphons has proven to be a powerful tool in many areas of graph theory. In this paper, we introduce several foundational aspects of the theory of digraphons -- asymmetric two-variable functions that arise as limits of…

Combinatorics · Mathematics 2025-12-16 Jan Hladký , Petr Savický

Graph coloring is fundamental to distributed computing. We give the first sub-logarithmic distributed algorithm for coloring cluster graphs. These graphs are obtained from the underlying communication network by contracting nodes and edges,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-17 Maxime Flin , Magnus M. Halldorsson , Alexandre Nolin

Graph Neural Networks (GNNs) are a powerful representational tool for solving problems on graph-structured inputs. In almost all cases so far, however, they have been applied to directly recovering a final solution from raw inputs, without…

Machine Learning · Statistics 2020-01-16 Petar Veličković , Rex Ying , Matilde Padovano , Raia Hadsell , Charles Blundell

Formation of a molecular network from multifunctional precursors is modelled with a random graph process. The random graph model favours reactivity for monomers that are positioned close in the network topology, and disfavours reactivity…

Soft Condensed Matter · Physics 2019-08-21 Ivan Kryven , Jorien Duivenvoorden , Joen Hermans , Piet D. Iedema

Despite recent advances, goal-directed generation of structured discrete data remains challenging. For problems such as program synthesis (generating source code) and materials design (generating molecules), finding examples which satisfy…

Machine Learning · Computer Science 2020-10-26 Amina Mollaysa , Brooks Paige , Alexandros Kalousis