Related papers: Old and young leaves on plane trees
Phylogenetic (i.e. leaf-labeled) trees play a fundamental role in evolutionary research. A typical problem is to reconstruct such trees from data like DNA alignments (whose columns are often referred to as characters), and a simple…
In the longest plane spanning tree problem, we are given a finite planar point set $\mathcal{P}$, and our task is to find a plane (i.e., noncrossing) spanning tree for $\mathcal{P}$ with maximum total Euclidean edge length. Despite more…
The {\sc Directed Maximum Leaf Out-Branching} problem is to find an out-branching (i.e. a rooted oriented spanning tree) in a given digraph with the maximum number of leaves. In this paper, we obtain two combinatorial results on the number…
Phylogenetic trees describe the evolutionary history of a group of present-day species from a common ancestor. These trees are typically reconstructed from aligned DNA sequence data. In this paper we analytically address the following…
For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…
A permutation is called layered if it consists of the disjoint union of substrings (layers) so that the entries decrease within each layer, and increase between the layers. We find the generating function for the number of permutations on…
Many real-world complex networks arise as a result of a competition between growth and rewiring processes. Usually the initial part of the evolution is dominated by growth while the later one rather by rewiring. The initial growth allows…
For a tree $T$, let $lp(T)$ be the number of different lengths of leaf to leaf paths in $T$. For a degree sequence $s$ of a tree, let ${\rm rad}(s)$ be the minimum radius of a tree with degree sequence $s$. Recently, Di Braccio,…
In this paper we consider the enumeration of binary trees avoiding non-contiguous binary tree patterns. We begin by computing closed formulas for the number of trees avoiding a single binary tree pattern with 4 or fewer leaves and compare…
A bijection $\Phi$ is presented between plane bipolar orientations with prescribed numbers of vertices and faces, and non-intersecting triples of upright lattice paths with prescribed extremities. This yields a combinatorial proof of the…
A $k$-ended tree is a tree with at most $k$ leaves. In this note, we give a simple proof for the following theorem. Let $G$ be a connected graph and $k$ be an integer ($k\geq 2$). Let $S$ be a vertex subset of $G$ such that $\alpha_{G}(S)…
Packing graphs is a combinatorial problem where several given graphs are being mapped into a common host graph such that every edge is used at most once. In the planar tree packing problem we are given two trees T1 and T2 on n vertices and…
For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…
The enumeration of maps and the study of uniform random maps have been classical topics of combinatorics and statistical physics ever since the seminal work of Tutte in the sixties. Following the bijective approach initiated by Cori and…
We study the random Fibonacci tree, which is an infinite binary tree with non-negative integers at each node. The root consists of the number 1 with a single child, also the number 1. We define the tree recursively in the following way: if…
We present an elegant bijection between standard Young tableaux with 2n cells and at most two rows, and pairs of standard Young tableaux of the same shape, with n+1 cells, where only the top row can have more than one cell.
This article presents unified bijective constructions for planar maps, with control on the face degrees and on the girth. Recall that the girth is the length of the smallest cycle, so that maps of girth at least $d=1,2,3$ are respectively…
Let T be a weighted tree with n numbered leaves and let D be its distance matrix, so D(i,j) is the distance between the leaves i and j. If m is an integer between 2 and n, we prove a tropical formula to compute the m-dissimilarity map of T…
Rooted phylogenetic networks provide a more complete representation of the ancestral relationship between species than phylogenetic trees when reticulate evolutionary processes are at play. One way to reconstruct a phylogenetic network is…
A combinatorial Gray code for a set of combinatorial objects is a sequence of all combinatorial objects in the set so that each object is derived from the preceding object by changing a small part. In this paper we design a Gray code for…