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The \emph{generalized sorting problem} is a restricted version of standard comparison sorting where we wish to sort $n$ elements but only a subset of pairs are allowed to be compared. Formally, there is some known graph $G = (V, E)$ on the…
The class of closed graphs by a linear ordering on their sets of vertices is investigated. A recent characterization of such a class of graphs is analyzed by using tools from the proper interval graph theory.
Two methods, structural (constructive) and multiplier (analytical), of exact enumeration of undirected and directed circulant graphs of orders 27 and 125 are elaborated and represented in detail here together with intermediate and final…
Intersection graphs are well-studied in the area of graph algorithms. Some intersection graph classes are known to have algorithms enumerating all unlabeled graphs by reverse search. Since these algorithms output graphs one by one and the…
We present a deterministic linear-time algorithm for finding an odd cycle through two specified vertices in an undirected graph. This is shown in a generalized form as follows: Let $\Gamma$ be any group in which every element is of order at…
Recent works on machine learning for combinatorial optimization have shown that learning based approaches can outperform heuristic methods in terms of speed and performance. In this paper, we consider the problem of finding an optimal…
We describe a linear-time algorithm that finds a planar drawing of every graph of a simple line or pseudoline arrangement within a grid of area O(n^{7/6}). No known input causes our algorithm to use area \Omega(n^{1+\epsilon}) for any…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
This paper develops a structural theory of unique shortest paths in real-weighted graphs. Our main goal is to characterize exactly which sets of node sequences, which we call path systems, can be realized as unique shortest paths in a graph…
We study the problem of determining the minimal genus of a simple finite connected graph. We present an algorithm which, for an arbitrary graph $G$ with $n$ vertices and $m$ edges, determines the orientable genus of $G$ in…
An ordered graph is a graph whose vertex set is equipped with a total order. The ordered complete graph $K_N^<$ is the complete graph with vertex set $[N]$ equipped with the natural ordering of the integers. Given an ordered graph $H$, the…
An ordered graph is a graph with a linear ordering on its vertex set. We prove that for every positive integer $k$, there exists a constant $c_k>0$ such that any ordered graph $G$ on $n$ vertices with the property that neither $G$ nor its…
We develop the methodology of positioning graph vertices relative to each other to solve the problem of determining isomorphism of two undirected graphs. Based on the position of the vertex in one of the graphs, it is determined the…
We investigate locally $n \times n$ grid graphs, that is, graphs in which the neighbourhood of any vertex is the Cartesian product of two complete graphs on $n$ vertices. We consider the subclass of these graphs for which each pair of…
Learning a graph topology to reveal the underlying relationship between data entities plays an important role in various machine learning and data analysis tasks. Under the assumption that structured data vary smoothly over a graph, the…
We present two on-line algorithms for maintaining a topological order of a directed $n$-vertex acyclic graph as arcs are added, and detecting a cycle when one is created. Our first algorithm handles $m$ arc additions in $O(m^{3/2})$ time.…
Interval routing is a space efficient method to realize a distributed routing function. In this paper we show that every circular-arc graph allows a shortest path strict 2-interval routing scheme, i.e., by introducing a global order on the…
Given a graph of which the n vertices form a regular two-dimensional grid, and in which each (possibly weighted and/or directed) edge connects a vertex to one of its eight neighbours, the following can be done in O(scan(n)) I/Os, provided M…
Classical graph algorithms work well for combinatorial problems that can be thoroughly formalized and abstracted. Once the algorithm is derived, it generalizes to instances of any size. However, developing an algorithm that handles complex…
One exact and two heuristic algorithms for determining the generators, orbits and order of the graph automorphism group are presented. A basic tool of these algorithms is the well-known individualization and refinement procedure. A search…