Related papers: Robust reconstruction on trees is determined by th…

We consider the following basic problem in phylogenetic tree construction. Let $\mathcal{P} = \{T_1, \ldots, T_k\}$ be a collection of rooted phylogenetic trees over various subsets of a set of species. The tree compatibility problem asks…

We study distorted metrics on binary trees in the context of phylogenetic reconstruction. Given a binary tree $T$ on $n$ leaves with a path metric $d$, consider the pairwise distances $\{d(u,v)\}$ between leaves. It is well known that these…

Network reliability analysis remains a challenge due to the increasing size and complexity of networks. This paper presents a novel sampling method and an active learning method for efficient and accurate network reliability estimation…

For every sufficiently well-behaved function $g:\mathbb{R}_{\ge 0}\rightarrow\mathbb{R}_{\ge 0}$ that grows at least linearly and at most exponentially we construct a tree $T$ of uniform volume growth $g$, that is, $$C_1\cdot g(r/4)\le…

Validating interpretable surrogate models for ensemble learners requires measuring agreement between the ensemble's internal representation and its surrogate approximation, rather than mere association. Correlation-based approaches are…

The tree-metric theorem provides a necessary and sufficient condition for a dissimilarity matrix to be a tree metric, and has served as the foundation for numerous distance-based reconstruction methods in phylogenetics. Our main result is…

We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…

Network growth models that embody principles such as preferential attachment and local attachment rules have received much attention over the last decade. Among various approaches, random walks have been leveraged to capture such…

A robust estimator for a wide family of mixtures of linear regression is presented. Robustness is based on the joint adoption of the Cluster Weighted Model and of an estimator based on trimming and restrictions. The selected model provides…

We study the inference of network archaeology in growing random geometric graphs. We consider the root finding problem for a random nearest neighbor tree in dimension $d \in \mathbb{N}$, generated by sequentially embedding vertices…

We derive an invariance principle for the lift to the rough path topology of stochastic processes with delayed regenerative increments under an optimal moment condition. An interesting feature of the result is the emergence of area anomaly,…

Given a rooted tree $T$ with vertices $u_1,u_2,\ldots,u_n$, the level matrix $L(T)$ of $T$ is the $n \times n$ matrix for which the $(i,j)$-th entry is the absolute difference of the distances from the root to $v_i$ and $v_j$. This matrix…

This paper introduces constNJ, the first algorithm for phylogenetic reconstruction of sets of trees with constrained pairwise rooted subtree-prune regraft (rSPR) distance. We are motivated by the problem of constructing sets of trees which…

We study two related probabilistic models of permutations and trees biased by their number of descents. Here, a descent in a permutation $\sigma$ is a pair of consecutive elements $\sigma(i), \sigma(i+1)$ such that $\sigma(i) >…

We consider the classic problem of Network Reliability. A network is given together with a source vertex, one or more target vertices, and probabilities assigned to each of the edges. Each edge appears in the network with its associated…

The reconstruction problem on the tree has been studied in numerous contexts including statistical physics, information theory and computational biology. However, rigorous reconstruction thresholds have only been established in a small…

In this paper, we consider a 3-dimensional free boundary problem modeling tumor growth with the Robin boundary condition. The system involves a positive parameter $\mu$ which reflects the intensity of tumor aggressiveness. Huang, Zhang and…

Random binary search trees are obtained by recursively inserting the elements $\sigma(1),\sigma(2),\ldots,\sigma(n)$ of a uniformly random permutation $\sigma$ of $[n]=\{1,\dots,n\}$ into a binary search tree data structure. Devroye (1986)…

We consider the Ising model on a general tree under various boundary conditions: all plus, free and spin-glass. In each case, we determine when the root is influenced by the boundary values in the limit as the boundary recedes to infinity.…

Enriching Brownian motion with regenerations from a fixed regeneration distribution $\mu$ at a particular regeneration rate $\kappa$ results in a Markov process that has a target distribution $\pi$ as its invariant distribution. For the…