Related papers: Bounds for DNA codes with constant GC-content
It is an important task to construct quantum maximum-distance-separable (MDS) codes with good parameters. In the present paper, we provide six new classes of q-ary quantum MDS codes by using generalized Reed-Solomon (GRS) codes and…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…
A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis…
We examine an error-correcting coding framework in which each coded symbol is constrained to be a function of a fixed subset of the message symbols. With an eye toward distributed storage applications, we seek to design systematic codes…
A subset of the Hamming cube over $n$-letter alphabet is said to be $d$-maximal if its diameter is $d$, and adding any point increases the diameter. Our main result shows that each $d$-maximal set is either of size at most $(n+o(n))^d$ or…
The size of the Hamming distance spectrum of a code has received great attention in recent research. The main objective of this paper is to extend these significant theories to the $b$-symbol distance spectrum. We examine this question for…
As a crucial technique for integrated circuits (IC) test response compaction, $X$-compact employs a special kind of codes called $X$-codes for reliable compressions of the test response in the presence of unknown logic values ($X$s). From a…
A covering code is a subset $\mathcal{C} \subseteq \{0,1\}^n$ with the property that any $z \in \{0,1\}^n$ is close to some $c \in \mathcal{C}$ in Hamming distance. For every $\epsilon,\delta>0$, we show a construction of a family of codes…
In a {\em locally recoverable} or {\em repairable} code, any symbol of a codeword can be recovered by reading only a small (constant) number of other symbols. The notion of local recoverability is important in the area of distributed…
We devise an analytically simple as well as invertible approximate expression, which describes the relation between the minimum distance of a binary code and the corresponding maximum attainable code-rate. For example, for a rate-(1/4),…
This paper presents a novel method to segment/decode DNA sequences based on n-grams statistical language model. Firstly, we find the length of most DNA 'words' is 12 to 15 bps by analyzing the genomes of 12 model species. Then we design an…
Let $A(n,d)$ be the maximum number of $0,1$ words of length $n$, any two having Hamming distance at least $d$. We prove $A(20,8)=256$, which implies that the quadruply shortened Golay code is optimal. Moreover, we show $A(18,6)\leq 673$,…
Maximum-distance separable (MDS) convolutional codes are characterized by the property that their free distance reaches the generalized Singleton bound. In this paper, new criteria to construct MDS convolutional codes are presented.…
Most bounds on the size of codes hold for any code, whether linear or not. Notably, the Griesmer bound holds only in the linear case and so optimal linear codes are not necessarily optimal codes. In this paper we identify code parameters…
Quasi-cyclic (QC) low-density parity-check (LDPC) codes are an important instance of proto-graph-based LDPC codes. In this paper we present upper bounds on the minimum Hamming distance of QC LDPC codes and study how these upper bounds…
A new lower bound on the minimum Hamming distance of linear quasi-cyclic codes over finite fields is proposed. It is based on spectral analysis and generalizes the Semenov- Trifonov bound in a similar way as the Hartmann-Tzeng bound extends…
For $q,n,d \in \mathbb{N}$, let $A_q(n,d)$ be the maximum size of a code $C \subseteq [q]^n$ with minimum distance at least $d$. We give a divisibility argument resulting in the new upper bounds $A_5(8,6) \leq 65$, $A_4(11,8)\leq 60$ and…
An equidistant code is a code in the Hamming space such that two distinct codewords have the same Hamming distance. This paper investigates the bounds for equidistant codes in Hamming spaces.
In this paper, we analyze $m$-dimensional ($m$D) convolutional codes with finite support, viewed as a natural generalization of one-dimensional (1D) convolutional codes to higher dimensions. An $m$D convolutional code with finite support…