Related papers: Bounds for DNA codes with constant GC-content
We consider the maximum coding rate achievable by uniformly-random codes for the deletion channel. We prove an upper bound that's within 0.1 of the best known lower bounds for all values of the deletion probability $d,$ and much closer for…
We describe properties and constructions of constraint-based codes for DNA-based data storage which account for the maximum repetition length and AT/GC balance. We present algorithms for computing the number of sequences with maximum…
In this paper, we give a matrix construction method for designing DNA codes that come from group matrix rings. We show that with our construction one can obtain reversible $G^k$-codes of length $kn,$ where $k, n \in \mathbb{N},$ over the…
We propose coding techniques that limit the length of homopolymers runs, ensure the GC-content constraint, and are capable of correcting a single edit error in strands of nucleotides in DNA-based data storage systems. In particular, for…
In [1] a syndrome counting based upper bound on the minimum distance of regular binary LDPC codes is given. In this paper we extend the bound to the case of irregular and generalized LDPC codes over GF(q). The comparison to the lower bound…
For nonnegative integers $n,d,w$, let $A(n,d,w)$ be the maximum size of a code $C \subseteq \mathbb{F}_2^n$ with constant weight $w$ and minimum distance at least $d$. We consider two semidefinite programs based on quadruples of code words…
New lower bounds on the minimum average Hamming distance of binary codes are derived. The bounds are obtained using linear programming approach.
In this present work, we generalize the study of construction of DNA codes over the rings $\mathcal{R}_\theta=\mathbb{Z}_4+w\mathbb{Z}_4$, $w^2 = \theta $ for $\theta \in \mathbb{Z}_4+w\mathbb{Z}_4$. Rigorous study along with…
We employ signed measures that are positive definite up to certain degrees to establish Levenshtein-type upper bounds on the cardinality of codes with given minimum and maximum distances, and universal lower bounds on the potential energy…
The maximum size of a binary code is studied as a function of its length N, minimum distance D, and minimum codeword weight W. This function B(N,D,W) is first characterized in terms of its exponential growth rate in the limit as N tends to…
DNA codes have garnered significant interest due to their utilization in digital media storage, cryptography, and DNA computing. In this paper, we first extend the results of constructing reversible group codes \cite{Cengellenmis} and…
We consider a new family of codes, termed asymmetric Lee distance codes, that arise in the design and implementation of DNA-based storage systems and systems with parallel string transmission protocols. The codewords are defined over a…
The biggest challenge when using DNA as a storage medium is maintaining its stability. The relative occurrence of Guanine (G) and Cytosine (C) is essential for the longevity of DNA. In addition to that, reverse complementary base pairs…
A permutation array(or code) of length $n$ and distance $d$, denoted by $(n,d)$ PA, is a set of permutations $C$ from some fixed set of $n$ elements such that the Hamming distance between distinct members $\mathbf{x},\mathbf{y}\in C$ is at…
We study the amount of reliable information that can be stored in a DNA-based storage system composed of short DNA molecules. In this regime, Shomorony and Heckel (2022) put forward a conjecture on the scaling of the number of information…
In this short note we give a new upper bound for the size of a set family with a single Hamming distance. Our proof is an application of the linear algebra bound method.
We propose to use the concept of the Hamming bound to derive the optimal criteria for learning hash codes with a deep network. In particular, when the number of binary hash codes (typically the number of image categories) and code length…
Let $\Gamma$ denote a distance-regular graph. The maximum size of codewords with minimum distance at least $d$ is denoted by $A(\Gamma,d)$. Let $\square_n$ denote the folded $n$-cube $H(n,2)$. We give an upper bound on $A(\square_n,d)$…
In this paper, we investigate the encoding circuit size of Hamming codes and Hadamard codes. To begin with, we prove the exact lower bound of circuit size required in the encoding of (punctured)~Hadamard codes and (extended)~Hamming codes.…
We investigate the asymptotic rates of length-$n$ binary codes with VC-dimension at most $dn$ and minimum distance at least $\delta n$. Two upper bounds are obtained, one as a simple corollary of a result by Haussler and the other via a…